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Updated: Sep 19, 2025

Biosensor-based High Throughput Biopanning and Bioinformatics Analysis Strategy for the Global Validation of Drug-protein Interactions
Published on: December 1, 2020
A trajectory-informed model for detecting drug-drug-host interaction from real-world data
Yi Shi1, Anna Sun1, Hongmei Nan2
1Department of Biostatistics and Health Data Science, Indiana University, Indianapolis, IN, USA.
A new trajectory-informed model (TIM) effectively detects adverse drug-drug interactions (DDIs) and drug-drug-host interactions (DDHIs), even in specific patient groups. This method improves upon traditional approaches for identifying drug-induced adverse events.
Area of Science:
- Pharmacovigilance and Drug Safety
- Data Mining and Machine Learning
- Real-World Evidence Analysis
Background:
- Adverse drug events (ADEs) pose a significant public health challenge.
- Existing data mining methods identify drug-drug interaction (DDI)-induced or drug-host interaction (DHI)-induced ADEs from real-world data.
- There is a need for methods that consider patient characteristics in ADE detection.
Purpose of the Study:
- To develop a novel method, the trajectory-informed model (TIM), for detecting adverse drug-drug interactions (DDIs) with specific attention to patient characteristics (drug-drug-host interactions, DDHIs).
- To propose an optimal study design using within-subject and between-subjects controls for enhanced ADE detection from real-world data.
Main Methods:
- Development of the trajectory-informed model (TIM) to identify DDHI signals.
- Implementation of an optimal control selection strategy for case-control studies.
- Analysis of large-scale US administrative claims data and a simulation study.
Main Results:
- Optimal control selection improved the area under the curve (AUC) for ADE detection compared to traditional designs (AUCs: 0.79-0.80 vs. 0.56-0.76).
- TIM identified more signals than reference methods (odds ratios: 1.13-3.18, P < 0.01), with 36% being DDHI signals.
- TIM demonstrated an empirical false discovery rate (FDR) < 0.05 and higher detection probabilities for DDHI signals in simulation studies.
Conclusions:
- TIM effectively detects ADE signals, including DDHIs, in high-throughput analysis while controlling false positive rates.
- Drug-drug combinations can increase ADE risk in specific patient subpopulations.
- Optimal control selection enhances the performance of ADE data mining.
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