Related Experiment Video
Updated: Sep 19, 2025

12:05
A Simple, Robust, and High Throughput Single Molecule Flow Stretching Assay Implementation for Studying Transport of Molecules Along DNA
Published on: October 1, 2017
8.3K
Diffusion of DNA on Atomically Flat 2D Material Surfaces
Dong Hoon Shin1,2,3, Sung Hyun Kim1,4,5, Kush Coshic6
1Kavli Institute of Nanoscience Delft, Lorentzweg 1, 2628 CJ Delft, The Netherlands.
ACS Nano
|June 5, 2025
Summary
Researchers explored DNA molecule interactions with hexagonal boron nitride (hBN) surfaces. They found DNA diffusion on hBN can be controlled by DNA length, surface features, and defects, enabling potential nanofluidic applications.
Area of Science:
- Materials Science
- Nanotechnology
- Biophysics
Background:
- Accurate localization and delivery of biomolecules are crucial for biological research tools.
- Atomically flat 2D surfaces offer potential for biomolecule manipulation, but experimental realization has been challenging.
Purpose of the Study:
- To comprehensively characterize the interactions of individual DNA molecules with hexagonal boron nitride (hBN) surfaces.
- To investigate the controllable diffusion of DNA on hBN surfaces.
- To explore the potential of hBN for nanofluidic guiding of biomolecules.
Main Methods:
- Combined single-molecule detection methods with computational approaches.
- Experimentally studied DNA molecule interactions with hBN surfaces.
- Fabricated narrow hBN ribbon structures for confinement studies.
Main Results:
- DNA molecules retain diffusion ability upon binding to hBN surfaces.
- DNA diffusion magnitude and direction are controllable by DNA length, surface topography, and atomic defects.
- Observed diffusion speeds were lower than predicted by simulations, explained by a temporary trapping model.
- Achieved pseudo-1D confinement using hBN ribbon structures.
Conclusions:
- Hexagonal boron nitride surfaces provide a platform for controlled biomolecule diffusion.
- Atomic defects on hBN surfaces play a significant role in modulating DNA diffusion.
- hBN ribbon structures demonstrate potential for nanofluidic guiding of biomolecules.
Related Concept Videos
Protein Diffusion in the Membrane
4.6K
Proteins show rotational as well as lateral diffusion across the membrane. The lateral diffusion of proteins was confirmed through the cell fusion experiment where mouse and human cells were fused, resulting in hybrid cells. When the human and mouse cells fused, the specific membrane proteins on human and mouse cells were marked with the red and green-fluorescent markers, respectively. Initially, the red and green fluorescence was located on the respective hemisphere of the cell. As time...
4.6K
DNA as a Genetic Template
22.9K
Two structural features of the DNA molecule provide a basis for the mechanisms of heredity: the four nucleotide bases and its double-stranded nature. The Watson-Crick model of double-helical DNA structure, proposed in 1952, drew heavily upon the X-ray crystallography work of researchers Rosalind Franklin and Maurice Wilkins. Watson, Crick, and Wilkins jointly received the Nobel Prize in Physiology or Medicine for their work in 1962. Franklin was, controversially, excluded from the prize for...
22.9K
The DNA Helix
25.7K
Deoxyribonucleic acid, or DNA, is the genetic material responsible for passing traits from generation to generation in all organisms and most viruses. DNA is composed of two strands of nucleotides that wind around each other to form a spring-like structure called a double helix. However, the double helix is not perfectly symmetrical. Instead, there are regularly occurring grooves in the structure. The major groove occurs where the sugar-phosphate backbones are relatively far apart. This space...
25.7K
Diffusion
5.3K
Diffusion is a type of passive transport. In passive transport, a substance tends to move from an area of high concentration to an area of low concentration until the concentration is equal across the space. For example, take the diffusion of substances through the air. When someone opens a perfume bottle in a room filled with people, the perfume is at its highest concentration in the bottle and is at its lowest at the edges of the room. The perfume vapor will diffuse, or spread away, from the...
5.3K
Lagging Strand Synthesis
54.4K
During replication, the complementary strands in double-stranded DNA are synthesized at different rates. Replication first begins on the leading strand. Replication starts later, occurs more slowly, and proceeds discontinuously on the lagging strand.
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...
54.4K

