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Updated: Sep 19, 2025

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
Oncogenic Fusions with Aberrant Transcriptional Regulation
Kaiqiang You1, Taoyu Chen1, Yuan Wang2
1Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Peking University Health Science Center, 100191 Beijing, China; Key Laboratory for Neuroscience, Ministry of Education/National Health Commission of China, Peking University, 100191 Beijing, China.
Abstract:
Fusion proteins resulting from aberrant genetic rearrangements are ubiquitous and of great significance during oncogenesis and cancer development. Many oncogenic fusion proteins, which integrate fusion partners originally involved in gene regulation, and cause abnormal activation or repression of cancer-driving genes, such as oncogenes and tumor suppressor genes. Recent research suggests that oncogenic fusions undergo phase separation and drive cancerous transcription. The aberrant transcriptional regulation represents a common feature of cancer driving fusions, potentially contributing to their oncogenic effects. Here we examined the aberrant transcriptional regulation of oncogenic fusions by examining the abnormal activation/repression of their target genes. We further reviewed their cancer type distribution, domain combinations, and functional classes. The landscape of aberrant transcriptional regulation in oncogenic fusions would provide insights for future research in fusion oncogenesis mechanism and developing targeting therapeutics.
Insights
Aberrant fusion proteins drive cancer by altering gene transcription. Understanding their regulatory roles and cancer associations offers new therapeutic targets for oncogenesis.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Aberrant genetic rearrangements create fusion proteins crucial in cancer development.
- Oncogenic fusion proteins often involve regulatory partners, leading to abnormal gene expression.
- Recent studies link oncogenic fusions to phase separation and aberrant transcription.
Purpose of the Study:
- To investigate the aberrant transcriptional regulation by oncogenic fusion proteins.
- To analyze the abnormal activation or repression of target genes influenced by these fusions.
- To review the distribution, domain combinations, and functional classes of cancer-driving fusions.
Main Methods:
- Examination of aberrant transcriptional regulation in oncogenic fusions.
- Analysis of abnormal activation/repression of target genes.
- Review of cancer type distribution, domain combinations, and functional classes.
Main Results:
- Oncogenic fusions exhibit aberrant transcriptional regulation impacting cancer-driving genes.
- Analysis revealed specific patterns in cancer type distribution, domain combinations, and functional classes.
- Aberrant transcription is a common feature contributing to oncogenic effects.
Conclusions:
- The study illuminates the landscape of aberrant transcriptional regulation in fusion oncogenesis.
- Findings provide insights into fusion oncogenesis mechanisms.
- Understanding these mechanisms can aid in developing targeted fusion-protein therapeutics.
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