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Predicting clinical phage therapy outcomes in vitro: results using mixed versus single isolates from an MRSA case
Meaghan Castledine1, Chloe Esom1, Brieuc Van Nieuwenhuyse2
1Centre for Ecology and Conservation, University of Exeter, Penryn Campus, Penryn TR10 9FE, United Kingdom.
Journal of Applied Microbiology
|June 11, 2025
Summary
Testing phage therapy on mixed bacterial isolates in vitro better predicted clinical outcomes in lung infections compared to single isolates. Phage therapy effectiveness varied based on bacterial genetic diversity at different infection sites.
Area of Science:
- Microbiology
- Infectious Diseases
- Bacteriophage Therapy
Background:
- Phage therapy is a promising alternative for treating bacterial infections, especially those caused by antibiotic-resistant strains.
- Current in vitro testing methods (phagograms) often use limited bacterial isolates, potentially not reflecting the complexity of in vivo infections.
- Bacterial populations can exhibit diverse susceptibility to phages and antibiotics, influencing treatment response.
Purpose of the Study:
- To evaluate if in vitro testing of mixed bacterial isolates with phages provides more accurate predictions of clinical outcomes than single isolates.
- To compare in vitro phage susceptibility results with clinical observations from a patient with methicillin-resistant Staphylococcus aureus (MRSA) infection.
Main Methods:
- A previously published clinical case study of MRSA treated with phage therapy and antibiotics was used as a reference.
- In vitro experiments tested phage efficacy against single and mixed isolates of the infecting MRSA strains.
- Results were compared between in vitro findings and clinical outcomes in different infection sites (blood vs. lungs).
Main Results:
- In vitro, mixed bacterial isolates were more likely to persist when treated with phages compared to single isolates.
- This persistence of mixed isolates in vitro more closely mirrored the slower bacterial clearance observed in the patient's lung infections.
- However, in vitro results did not as accurately represent the rapid clearance seen in the patient's blood cultures.
Conclusions:
- The choice of using single versus mixed bacterial isolates significantly impacts in vitro phage therapy predictions.
- The predictive accuracy of in vitro models depends on the specific site of infection and the genetic diversity of the bacteria in vivo.
- These findings highlight the importance of considering bacterial population heterogeneity in developing personalized phage therapy strategies.

