Foundation model embeddings for quantitative tumor imaging biomarkers

Foundation models are increasingly used in medical imaging, yet their ability to extract reliable quantitative radiographic phenotypes of cancer across diverse clinical contexts lacks systematic evaluation. Here, we introduce TumorImagingBench, a curated benchmark comprising six public datasets (3,244 scans) with varied oncological endpoints. We evaluate ten medical imaging foundation models, representing diverse architectures and pre-training strategies developed between 2020 and 2025, assessing their performance in deriving deep learning-based radiographic phenotypes. Our analysis extends beyond endpoint prediction performance and compares robustness to common sources of variability and saliency-based interpretability. We additionally compare the mutual similarity of learned embedding representations across each of the models. This comparative benchmarking reveals performance disparities among models and provides critical insights to guide the selection of optimal foundation models for specific quantitative imaging tasks. We publicly release all code, curated datasets, and benchmark results to foster reproducible research and future developments in quantitative cancer imaging.