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Updated: Jun 14, 2025

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Applications of the Single-probe: Mass Spectrometry Imaging and Single Cell Analysis under Ambient Conditions
Published on: June 14, 2016
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High-spatial-resolution mass spectrometry imaging of biological tissues using a microfluidic probe
Li-Xue Jiang1, Xiangtang Li1, Matthias Polack2
1James Tarpo Jr. and Margaret Tarpo Department of Chemistry, Purdue University, West Lafayette, IN, USA.
Nature Protocols
|June 12, 2025
Summary
We developed a user-friendly microfluidic probe (MFP) for nanospray desorption electrospray ionization mass spectrometry imaging (nano-DESI MSI). This innovation enhances throughput and accessibility for high-resolution molecular mapping of biological samples.
Area of Science:
- Analytical Chemistry
- Biotechnology
- Mass Spectrometry
Background:
- Nanospray desorption electrospray ionization (nano-DESI) is a powerful technique for molecular mapping of biological samples.
- Wider adoption of nano-DESI mass spectrometry imaging (MSI) is limited by complexity and throughput.
- High spatial resolution is crucial for detailed analysis of biological tissues.
Purpose of the Study:
- To develop a robust and user-friendly microfluidic probe (MFP) for nano-DESI MSI.
- To improve the experimental throughput and accessibility of nano-DESI MSI.
- To provide a comprehensive workflow for nano-DESI MSI, from probe fabrication to data analysis.
Main Methods:
- Design and fabrication of a novel microfluidic probe (MFP).
- Integration of the MFP into the nano-DESI MSI workflow.
- Optimization of experimental parameters for high-resolution imaging and throughput.
Main Results:
- Achieved high spatial resolution of 8-10 µm for molecular mapping.
- Demonstrated up to a 10-fold improvement in experimental throughput.
- Enabled imaging of large tissue sections with cellular resolution.
- Developed a complete workflow for probe assembly, data acquisition, and analysis.
Conclusions:
- The developed MFP significantly enhances the ease of use and efficiency of nano-DESI MSI.
- This advancement makes high-resolution molecular mapping more accessible to the scientific community.
- The user-friendly probe and workflow streamline the analysis of biological samples.

