Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Predicting Molecular Geometry02:27

Predicting Molecular Geometry

34.1K
VSEPR Theory for Determination of Electron Pair Geometries
34.1K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

A chameleon-like core-shell organic/lanthanide flexible crystal waveguide for bandwidth and colour tunability.

Chemical science·2026
Same author

Machine Learning-Assisted Local-to-Global Optimization Strategy for Accelerated Molecular Cluster Structure Prediction.

Journal of chemical information and modeling·2026
Same author

Directed Electrostatics Strategy Integrated as a Graph Neural Network Approach for Accelerated Cluster Structure Prediction.

Journal of chemical theory and computation·2025
Same author

Fragment-Based Approaches for Supramolecular Interaction Energies: Applications to Foldamers and Their Complexes with Anions.

Journal of chemical theory and computation·2018

Related Experiment Video

Updated: Jun 14, 2025

Graphene Enclosure of Chemically Fixed Mammalian Cells for Liquid-Phase Electron Microscopy
10:12

Graphene Enclosure of Chemically Fixed Mammalian Cells for Liquid-Phase Electron Microscopy

Published on: September 21, 2020

7.1K

Geometric Guidance Integrated with Directed Electrostatics Strategy within a Graph Neural Network Approach for

Sridatri Nandy1, K V Jovan Jose1

  • 1Advanced Artificial Intelligence Theoretical and Computational Chemistry Laboratory, School of Chemistry, University of Hyderabad, Hyderabad 500046, Telangana, India.

The Journal of Physical Chemistry. A
|June 13, 2025
PubMed
Summary

We introduce Geometric-DESIGNN, a Graph Neural Network method combining geometric and electrostatic strategies to predict stable nanocluster configurations. This efficient approach accelerates the discovery of new atomic cluster structures with specific symmetries.

More Related Videos

Scalable Nanohelices for Predictive Studies and Enhanced 3D Visualization
08:03

Scalable Nanohelices for Predictive Studies and Enhanced 3D Visualization

Published on: November 12, 2014

10.5K
Author Spotlight: Enhancing CryoEM Sample Preparation Using Graphene Monolayer on Microscopy Grids
07:57

Author Spotlight: Enhancing CryoEM Sample Preparation Using Graphene Monolayer on Microscopy Grids

Published on: November 10, 2023

1.7K

Related Experiment Videos

Last Updated: Jun 14, 2025

Graphene Enclosure of Chemically Fixed Mammalian Cells for Liquid-Phase Electron Microscopy
10:12

Graphene Enclosure of Chemically Fixed Mammalian Cells for Liquid-Phase Electron Microscopy

Published on: September 21, 2020

7.1K
Scalable Nanohelices for Predictive Studies and Enhanced 3D Visualization
08:03

Scalable Nanohelices for Predictive Studies and Enhanced 3D Visualization

Published on: November 12, 2014

10.5K
Author Spotlight: Enhancing CryoEM Sample Preparation Using Graphene Monolayer on Microscopy Grids
07:57

Author Spotlight: Enhancing CryoEM Sample Preparation Using Graphene Monolayer on Microscopy Grids

Published on: November 10, 2023

1.7K

Area of Science:

  • Computational chemistry and materials science
  • Nanotechnology and materials engineering
  • Artificial intelligence in scientific discovery

Background:

  • Predicting stable nanocluster configurations is crucial for materials science.
  • Existing methods struggle with large atomic clusters and specific symmetries.
  • Graph Neural Networks offer a powerful framework for complex structural predictions.

Purpose of the Study:

  • To develop an efficient computational method for predicting stable nanocluster structures.
  • To integrate geometric and electronic strategies for enhanced prediction accuracy.
  • To identify new symmetric isomers of medium to large nanoclusters.

Main Methods:

  • Introduction of the Geometric-DESIGNN method, integrating Geometric Guidance and Directed Electrostatics Strategy.
  • Utilizing a Graph Neural Network framework for predicting nanocluster configurations on potential energy surfaces.
  • Alternating geometric and DESIGNN building strategies for shell-by-shell cluster construction.

Main Results:

  • Successful prediction of stable configurations for Mgn clusters up to n < 561.
  • Identification of new symmetric isomers for Mgn clusters (n < 150) by constraining point-group symmetry.
  • Construction of stable Mgn nanoclusters for specific large sizes (n = 332, 338, 561).

Conclusions:

  • Geometric-DESIGNN is an efficient tool for accelerated nanocluster structure prediction.
  • The method effectively merges geometric and electronic strategies for accurate structural modeling.
  • This approach facilitates the discovery of novel atomic cluster structures with desired symmetries.