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Updated: Jun 14, 2025

The Use of Chemostats in Microbial Systems Biology
Published on: October 14, 2013
What is a chemostat? Insights from hybrid dynamics and stochastic thermodynamics
Benedikt Remlein1, Massimiliano Esposito1, Francesco Avanzini2
1Complex Systems and Statistical Mechanics, Department of Physics and Materials Science, University of Luxembourg, 30 Avenue des Hauts-Fourneaux, L-4362 Esch-sur-Alzette, Luxembourg.
Abstract:
At the microscopic scale, open chemical reaction networks are described by stochastic reactions that follow mass-action kinetics and are coupled to chemostats. We show that closed chemical reaction networks-with specific stoichiometries imposed by mass-action kinetics-behave like open ones in the limit where the abundances of a subset of species become macroscopic, thus playing the role of chemostats. We prove that this limit is thermodynamically consistent by recovering the local detailed balance condition of open chemical reaction networks and deriving the proper expression of the entropy production rate. In particular, the entropy production rate features two contributions: one for the dissipation of the stochastic reactions and the other accounting for the dissipation of continuous reactions controlling the chemostats. Finally, we illustrate our results for two prototypical examples.
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