Development and experimental verification of a prognosis model for hypoxia- and lactate metabolism-associated genes...

Hypoxia and lactate metabolism are both distinctive characteristics of cancerous cells. Head and neck squamous cell carcinoma (HNSCC) is one of the most prevalent forms of cancer. The objective of this study was to construct a prognostic model of genes related to hypoxia and lactate metabolism in order to facilitate the study of the prognosis, tumor immune microenvironment and therapeutic response of patients with HNSCC. The RNA-seq and clinical data for HNSCC were obtained from The Cancer Genome Atlas database and gene expression omnibus. The hypoxia- and lactate metabolism-related genes were obtained from the Molecular Signatures Database. The identification of differentially expressed genes was conducted using the "limma" R package. Subsequently, protein-protein interaction networks of the differentially expressed genes were constructed using the STRING database and Cytoscape software. A hypoxia-lactate metabolism-related prognostic model was constructed through the application of univariate Cox regression, random survival forest, and stepwise multivariate Cox regression analyses. Subsequently, further analyses were conducted, including principal component analysis, gene enrichment analysis, CIBERSORT (Cell-type Identification By Estimating Relative Subsets Of RNA Transcripts), ImmuCellAI, ESTIMATE, tumor immune dysfunction and exclusion, IPS, oncoPredict, and CellMiner. These were performed to analyze the differences in immune landscapes and treatment responses. The results of our study demonstrate that hypoxia- and lactate metabolism-related features are promising biomarkers for predicting outcomes in patients with HNSCC.