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Updated: Sep 19, 2025

Identification of Nucleolar Factors During HIV-1 Replication Through Rev Immunoprecipitation and Mass Spectrometry
Published on: June 26, 2019
HIV Vpr activates a nucleolar-specific ATR pathway to degrade the nucleolar stress sensor CCDC137
Karly A Nisson1, Rishi S Patel2, Yennifer Delgado1
1Molecular Biology Institute, University of California, Los Angeles, CA, 90095, United States.
Abstract:
The lentiviral accessory protein Vpr engages an extensive network of cellular pathways to drive diverse host consequences. Of its many phenotypes, CRL4A-E3 ubiquitin ligase complex co-option, DNA damage response (DDR) engagement, and G2/M arrest are conserved and thus proposed to be functionally important. How Vpr effects these functions and whether they explain how Vpr dysregulates additional cellular pathways remain unclear. Here we leverage the ability of Vpr to deplete the nucleolar protein CCDC137 to understand how Vpr-induced DDR activation impacts nucleolar processes. We characterize CCDC137 as an indirect Vpr target whose degradation does not correlate with Vpr-induced G2/M arrest. Yet, degradation is conserved among Vpr from the pandemic HIV-1 and related SIVcpz/SIVgor, and it is triggered by genomic insults that activate a nucleolar ATR pathway in a manner similar to camptothecin. We determine that Vpr causes ATR-dependent features of nucleolar stress that correlate with CCDC137 degradation, including redistribution of nucleolar proteins, altered nucleolar morphology, and repressed ribosome biogenesis. Together, these data distinguish CCDC137 as a non-canonical Vpr target that may serve as a sensor of nucleolar disruption, and in doing so, identify a novel role for Vpr in nucleolar stress.
Insights
The lentiviral protein Vpr causes nucleolar stress by degrading CCDC137, a protein that senses nucleolar disruption. This Vpr-induced nucleolar stress impacts ribosome biogenesis and cellular pathways.
Area of Science:
- Virology
- Molecular Biology
- Cell Biology
Background:
- The lentiviral protein Vpr interacts with cellular pathways, leading to host consequences like DNA damage response (DDR) and G2/M arrest.
- The precise mechanisms by which Vpr influences these pathways and affects other cellular processes remain incompletely understood.
Purpose of the Study:
- To investigate how Vpr-induced DDR activation impacts nucleolar processes by examining the Vpr-mediated depletion of the nucleolar protein CCDC137.
- To characterize the role of CCDC137 degradation in Vpr's broader cellular effects.
Main Methods:
- Characterization of CCDC137 as an indirect Vpr target.
- Analysis of CCDC137 degradation in response to Vpr and genomic insults.
- Assessment of nucleolar stress markers, including protein redistribution, morphological changes, and ribosome biogenesis, in the presence of Vpr.
- Investigating the involvement of the ATR pathway in Vpr-induced nucleolar stress.
Main Results:
- CCDC137 is an indirect Vpr target, and its degradation does not correlate with Vpr-induced G2/M arrest.
- CCDC137 degradation is conserved across different lentiviral Vpr proteins and is triggered by genomic insults activating a nucleolar ATR pathway.
- Vpr induces ATR-dependent nucleolar stress, characterized by nucleolar protein redistribution, altered morphology, and repressed ribosome biogenesis, which correlates with CCDC137 degradation.
Conclusions:
- CCDC137 functions as a non-canonical Vpr target and potentially as a sensor of nucleolar disruption.
- Vpr plays a novel role in inducing nucleolar stress, impacting ribosome biogenesis and cellular functions through CCDC137 degradation and ATR pathway activation.
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