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Updated: Sep 19, 2025

Modeling the Functional Network for Spatial Navigation in the Human Brain
Published on: October 13, 2023
Compressing regularized dynamics improves link prediction with the map equation in sparse networks
Maja Lindström1, Christopher Blöcker2, Tommy Löfstedt3
1Umeå University, Umeå University, Department of Computing Science, MIT-huset, SE-901 87 Umeå, Sweden; Integrated Science Lab, SE-901 87 Umeå, Sweden; and Siftlab AB, Döbelnsgatan 12, SE-113 58 Stockholm, Sweden.
Abstract:
Predicting future interactions or novel links in networks is an indispensable tool across diverse domains, including genetic research, online social networks, and recommendation systems. Among the numerous techniques developed for link prediction, those leveraging the networks' community structure have proven highly effective. For example, the recently proposed MapSim predicts links based on a similarity measure derived from the code structure of the map equation, a community-detection objective function that operates on network flows. However, the standard map equation assumes complete observations and typically identifies many small modules in networks where the nodes connect through only a few links. This aspect can degrade MapSim's performance on sparse networks. To overcome this limitation, we propose to incorporate a global regularization method based on a Bayesian estimate of the transition rates along with three local regularization methods. The regularized versions of the map equation compensate for incomplete observations and mitigate spurious community fragmentation in sparse networks. The regularized methods outperform standard MapSim and several state-of-the-art embedding methods in highly sparse networks. This performance holds across multiple real-world networks with randomly removed links, simulating incomplete observations. Among the proposed regularization methods, the global approach provides the most reliable community detection and the highest link prediction performance across different network densities. The principled method requires no hyperparameter tuning and runs at least an order of magnitude faster than the embedding methods.
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