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Detection of Tissue-resident Bacteria in Bladder Biopsies by 16S rRNA Fluorescence In Situ Hybridization
Published on: October 18, 2019
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Detection limitations of bacteria in tissue samples
Tim Holm Jakobsen1, Julius Bier Kirkegaard2, Mads Lichtenberg1
1Costerton Biofilm Center, Department of Immunology and Microbiology, University of Copenhagen, Copenhagen, Denmark.
Bone & Joint Research
|June 19, 2025
Summary
Bacterial aggregation in tissue samples significantly reduces detection probability. Increased aggregate size lowers the chance of a positive biopsy, impacting infection diagnosis.
Area of Science:
- Microbiology
- Medical Diagnostics
- Infectious Diseases
Background:
- Accurate bacterial identification in tissue is crucial for diagnosing infections.
- Detecting low bacterial loads, common in biofilms and heterogeneous infections, presents significant challenges.
- Bacterial aggregation and distribution within tissue impact diagnostic sensitivity.
Purpose of the Study:
- To investigate the impact of bacterial aggregation on detection probability in tissue samples.
- To develop a model for predicting bacterial detection based on aggregate size and number.
- To address challenges in diagnosing infections with low bacterial counts.
Main Methods:
- Development of simple formulae to calculate bacterial detection probability.
- Incorporation of bacterial number and aggregate size as key variables.
- Definition of a critical aggregation parameter influencing detection.
Main Results:
- Bacterial aggregation strongly reduces the probability of successful detection.
- Larger bacterial aggregates lead to a decreased likelihood of obtaining a positive biopsy.
- At high aggregation levels, increasing specimen numbers becomes ineffective, leading to false negatives.
Conclusions:
- Heterogeneous bacterial distribution and sampling complexities contribute to false-negative diagnoses, particularly in orthopaedic surgical site infections.
- Tissue homogenization may improve detection rates of heterogeneously distributed bacteria.
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