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Updated: Sep 18, 2025

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
Published on: June 11, 2015
Structure of the virulence-associated Neisseria meningitidis filamentous bacteriophage MDAΦ
Jan Böhning1, Miles Graham1, Mathieu Coureuil2
1Structural Studies Division, Medical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom.
Abstract:
Neisseria meningitidis is a human commensal bacterium that can opportunistically invade the bloodstream and cross the blood-brain barrier, where it can cause septicemia and meningitis. These diseases, if left untreated, can be lethal within hours. Hyperinvasive N. meningitidis strains often express a genomically encoded filamentous bacteriophage called MDAΦ, which promotes colonization of mucosal host surfaces to facilitate bacterial invasion. How this phage is organized and how it promotes biofilm formation and infection at the molecular level is unclear. Here, we present an electron cryomicroscopy structure of the MDA phage, showing that MDAΦ is a class I filamentous inovirus, with the major capsid protein (MCP) arranged within the phage as a highly curved and densely packed α-helix. Comparison with other filamentous bacteriophages offers clues about inoviral genome encapsidation mechanisms, providing a framework for understanding the evolutionary diversity of inoviruses. A disordered, N-terminal segment in the MCP presents hydrophobic patches on the surface of assembled phage particles, which, together with electron cryotomography data of phage bundles, furnishes a structural rationale for phage-phage interactions that were seen previously in an epithelium adhesion infection model of N. meningitidis. Taken together, our results shed light on the structure, organization, and higher-order assembly of a biomedically relevant phage encoded in the genome of a human pathogen. Molecular insights gleaned from this study increase our understanding of phage evolution, phage-mediated bacterial adhesion, and pathogenicity.
Insights
Researchers revealed the structure of the MDA bacteriophage (MDAΦ) from the pathogen Neisseria meningitidis. This filamentous phage promotes bacterial invasion and infection by facilitating adhesion and biofilm formation.
Area of Science:
- Microbiology
- Structural Biology
- Virology
Background:
- Neisseria meningitidis is a human pathogen causing life-threatening meningitis and septicemia.
- Hyperinvasive strains often express the MDA bacteriophage (MDAΦ), crucial for mucosal colonization and invasion.
- The molecular mechanisms of MDAΦ's role in biofilm formation and infection remain unclear.
Purpose of the Study:
- To determine the structure and organization of the MDA bacteriophage (MDAΦ).
- To elucidate the molecular mechanisms underlying MDAΦ's role in Neisseria meningitidis pathogenesis.
- To provide insights into the evolution and diversity of filamentous bacteriophages.
Main Methods:
- Electron cryomicroscopy (cryo-EM) was used to determine the structure of the MDA phage.
- Electron cryotomography (cryo-ET) was employed to analyze phage bundles and higher-order assembly.
- Comparative analysis with other filamentous bacteriophages was performed.
Main Results:
- The MDAΦ was characterized as a class I filamentous inovirus with a highly curved, densely packed major capsid protein (MCP) structure.
- A disordered N-terminal segment of the MCP exposes hydrophobic patches, mediating phage-phage interactions.
- These interactions provide a structural basis for previously observed epithelial adhesion and infection.
Conclusions:
- The study reveals the detailed structure and assembly of the MDA phage, a key virulence factor in Neisseria meningitidis.
- Insights into phage-phage interactions offer a molecular explanation for enhanced bacterial adhesion and pathogenicity.
- This work contributes to understanding phage evolution, bacterial adhesion mechanisms, and the pathogenicity of N. meningitidis.
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