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Updated: Sep 18, 2025

Tracking Rats in Operant Conditioning Chambers Using a Versatile Homemade Video Camera and DeepLabCut
Published on: June 15, 2020
Animal re-identification in video through track clustering
Francis J Williams1, Samuel L Hennessey1, Ludmila I Kuncheva1
1School of Computer Science and Engineering, Bangor University, Dean Street, Bangor, Gwynedd LL57 1UT UK.
Abstract:
Monitoring a group of animals would greatly benefit from automated animal re-identification from video. Multiple Object Tracking alone does not provide a sufficiently good re-identification, hence we propose to augment the process by further clustering the output tracks. Unlike datasets for person and vehicle identification, existing animal datasets are not substantial enough to train an advanced model for conventional clustering. In this paper, we present a Classification-Based Clustering method (CBC) which employs track labels and temporal constraints to train a bespoke model for each video dataset. Our proposed method works better than using the tracks alone as animal identities. It also outperforms 13 alternative clustering methods applied to the tracking results.
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