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Updated: Sep 18, 2025

A Protocol for Analyzing Hepatitis C Virus Replication
Published on: June 26, 2014
Rapid hepatitis C virus replication machinery removal after antiviral treatment with DAA monitored by multimodal
Victoria Castro1, Gema Calvo1, Ana J Pérez-Berná2
1Centro Nacional de Biotecnología, Calle Darwin, 3, 28049 Madrid, Spain.
Abstract:
Hepatitis C virus (HCV) replication causes a profound remodeling of the host endomembrane system. The availability of direct-acting antiviral (DAA) drugs provides an opportunity to define the ultrastructural events that follow viral replication blockade using confocal immunofluorescence, transmission electron microscopy (TEM) as well as correlative cryogenic light-soft X-ray tomography (CLSXT). Study of DAA-treated HCV replicons using CLSXT indicates that HCV-induced membranous alterations are no longer visible after 24 h of treatment and that a component of the replicase is located in pleomorphic, high-absorption contrast acidic organelles. TEM studies confirmed the rapid elimination of the viral machinery, and the concurrent appearance of large endo-lysosomes in DAA-treated cells. These and results by others suggest that HCV replication compartment may constantly be recycled by the endo-lysosomal system and that this equilibrium is unbalanced by DAA treatment, resulting in a transient activation of the endo-lysosomal system to achieve rapid viral machinery removal.

