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Reconstructing cerebral hemodynamics from sparse data using Neural Operator Transformers.
Wojciech Kaczmarek1, Jakub Magdziarz Ibrahim-El-Nur1, Magdalena Łoś1
1Department of Social Medicine and Public Health of Medical University of Warsaw, Pawińskiego 3a, Warsaw, 02-106, Poland.
Computers in Biology and Medicine
|June 24, 2025
Summary
A new computational framework uses neural operators to accurately model brain blood flow in the Circle of Willis. This approach enables fast, real-time analysis for improved diagnosis of cerebrovascular diseases.
Area of Science:
- Computational fluid dynamics
- Cerebrovascular hemodynamics
- Artificial intelligence in medicine
Background:
- Cardiovascular diseases necessitate advanced methods for analyzing brain hemodynamics.
- Current computational models for the Circle of Willis lack real-time clinical applicability due to accuracy and speed limitations.
Purpose of the Study:
- To develop a novel computational framework for accurate and fast reconstruction of cerebral hemodynamics.
- To enable real-time inference of subject-specific boundary conditions for personalized cerebrovascular diagnostics.
Main Methods:
- Integration of a 1D reduced-order blood flow model with General Neural Operator Transformer and Variational Autoencoding Neural Operator architectures.
- Generation of synthetic data via finite-element simulations for training neural operators.
- Application of an inverse procedure for hemodynamic reconstruction and adaptive grid search for boundary condition estimation.
Main Results:
- Surrogate model achieved <1% mean relative error in velocity and area predictions for major Circle of Willis vessels.
- Global error in reconstructing entire networks from sparse measurements was approximately 3.3%.
- Adaptive boundary condition estimation accurately reproduced outlet pressures, facilitating case-specific calibration.
Conclusions:
- The neural-operator-based framework provides fast and accurate cerebral hemodynamic reconstruction from limited data.
- This approach holds significant potential for real-time clinical integration and personalized digital-twin workflows in cerebrovascular diagnostics.

