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Updated: Sep 18, 2025

Comparative Lesions Analysis Through a Targeted Sequencing Approach
Published on: November 5, 2019
Missed opportunities: Germline testing following tumor sequencing.
Hannah C Karpel1, Simone Sasse2, Bhavana Pothuri1
1New York University, Department of Obstetrics and Gynecology, New York, NY, USA.
Many patients eligible for germline genetic testing (GT) based on tumor next-generation sequencing (NGS) results do not receive it, often due to lack of referral. This missed opportunity can delay diagnosis of hereditary cancer syndromes.
Area of Science:
- Oncology
- Genetics
- Cancer Research
Background:
- Tumor next-generation sequencing (NGS) can reveal potential germline DNA mutations linked to cancer susceptibility.
- Identifying these mutations is crucial for understanding hereditary cancer syndromes and guiding treatment decisions.
Purpose of the Study:
- To determine the frequency of actionable germline mutations identified via tumor NGS in patients meeting ESMO 2019 guidelines for germline genetic testing (GT).
- To investigate the reasons why eligible patients do not undergo germline GT.
- To assess the proportion of patients with actionable mutations who were not referred for GT.
Main Methods:
- Retrospective study of patients undergoing tumor NGS between September 2019 and February 2022.
- Identification of patients meeting ESMO guidelines for potentially actionable germline mutations.
- Analysis of reasons for not undergoing germline GT among eligible patients.
Main Results:
- Of 3470 patients, 326 (9.4%) had potential actionable germline mutations on tumor NGS.
- 189 (58.0%) eligible patients did not receive germline GT, most commonly due to lack of referral (67.2%).
- Among those not referred, 50.4% had mutations in BRCA1/2 and/or Lynch syndrome genes; 62.8% of those who did undergo GT were positive.
Conclusions:
- A significant proportion (60%) of patients eligible for germline GT based on ESMO criteria did not receive it, primarily due to insufficient referrals.
- Over half of patients not referred for GT harbored mutations in well-known cancer susceptibility genes (e.g., BRCA1/2).
- Improved education on germline eligibility and implementation of reflex clinical protocols are necessary to ensure timely genetic testing.
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