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Whole Genome Sequencing of Candida glabrata for Detection of Markers of Antifungal Drug Resistance
Published on: December 28, 2017
Genetic Confirmation of Clonal Spread of Candida auris from Southern to Northern Nevada
Paul J Resong1, Joseph Lee1, Adam Vazquez2
1Department of Medicine, University of Nevada Reno School of Medicine, Reno, NV 89250, USA.
Abstract:
Candida auris is an emerging fungal pathogen characterized by high levels of antifungal drug resistance and hospital outbreaks in a global distribution. Since introduction to the United States, it has been identified most frequently in New York, Illinois, California, Florida, and Nevada. Its surge poses significant risk as a nosocomial infection with multi-drug resistance, with clades bearing resistance to fluconazole, micafungin, and amphotericin B. Within the state of Nevada, and specifically the greater Las Vegas area in the southern part of the state, there are ongoing outbreaks from clade I and clade III, with 1728 confirmed clinical cases identified as of January 2025. In northern Nevada, three clinical cases have been identified to date, with two occurring at our facility. Both patients had been hospitalized at facilities in Las Vegas, Nevada. The C. auris strains isolated from these two cases have been identified as belonging to clade III and demonstrate resistance to fluconazole. Genome sequencing of the C. auris isolates indicates close genetic identity to strains from the Las Vegas outbreak. These data indicate that the spread of these clonal isolates is due to hospitalization and subsequent patient relocation to northern Nevada, revealing the ongoing importance of screening for geographic spread.
Insights
Candida auris, a drug-resistant fungus, is spreading in Nevada. Hospitalization and patient relocation are key factors in its geographic spread, highlighting the need for screening.
Area of Science:
- Medical Mycology
- Infectious Diseases
- Public Health
Background:
- Candida auris is an emerging fungal pathogen with global distribution.
- It exhibits high levels of antifungal drug resistance, posing a significant nosocomial infection risk.
- The pathogen has been identified in multiple US states, including Nevada.
Observation:
- Ongoing outbreaks of Candida auris, specifically clades I and III, are occurring in southern Nevada, particularly the Las Vegas area.
- As of January 2025, 1728 clinical cases have been confirmed in southern Nevada.
- Three clinical cases have been identified in northern Nevada, with two at the reporting facility.
Findings:
- The two northern Nevada cases involved patients previously hospitalized in Las Vegas.
- Isolates from these cases belong to clade III and are resistant to fluconazole.
- Genome sequencing confirmed close genetic identity between northern Nevada and Las Vegas strains.
Implications:
- Patient relocation following hospitalization is a primary driver for the geographic spread of Candida auris.
- Screening for Candida auris is crucial to monitor and control its spread within and between regions.
- Understanding transmission dynamics is vital for preventing future outbreaks of this multi-drug resistant fungus.

