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Identification and Analysis of Differentially Expressed Ferroptosis-Related Genes in Microtia
Jingyang Zhou1, Runmeng Cui, Lin Lin
1Ear Reconstruction Center, Plastic Surgery Hospital, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, China.
Abstract:
Microtia is a congenital auricle deformity that might be caused by the abnormal development of the auricular cartilage during the pregnancy. The ferroptosis has been identified to be associated with quite number of diseases related to the cartilage. So the aim of this study is to reveal the genetic relationship between the microtia and the ferroptosis through an approach of bioinformatics analysis and provide inspiration for subsequent research in this field. In this study, the online gene expression profile GSE242921, along with the FerrDB database, was utilized to screen the differentially expressed genes related to the ferroptosis in microtia. The top 10 differentially expressed ferroptosis-related genes identified in this analysis are STAT3, CDH1, HRAS, CDKN2A, SLC1A5, PTPN6, DDR2, FURIN, SMAD7, and IFNA6, and the transcription factors with degree no <5 of aforementioned genes are FOXC1, USF2, GATA2, CREB1, E2F1, and TFAP2A. In general, there is a close and non-negligible link between ferroptosis and microtia at the genetic level, but the genetic mechanisms underlying the role of ferroptosis in the pathogenetic process of microtia still need more experimental data to determine.
Insights
This study reveals a genetic link between microtia, a congenital ear deformity, and ferroptosis, a cell death process. Key ferroptosis-related genes and transcription factors were identified, suggesting ferroptosis
Area of Science:
- Genetics
- Biochemistry
- Developmental Biology
Background:
- Microtia is a congenital deformity of the auricle, potentially linked to abnormal auricular cartilage development during gestation.
- Ferroptosis, a regulated cell death pathway, has been implicated in various cartilage-related diseases.
Purpose of the Study:
- To investigate the genetic relationship between microtia and ferroptosis using bioinformatics.
- To identify key genes and regulatory factors involved in this association for future research.
Main Methods:
- Utilized the gene expression profile GSE242921.
- Cross-referenced with the FerrDB database to identify differentially expressed ferroptosis-related genes in microtia.
- Analyzed transcription factors associated with these genes.
Main Results:
- Identified 10 differentially expressed ferroptosis-related genes: STAT3, CDH1, HRAS, CDKN2A, SLC1A5, PTPN6, DDR2, FURIN, SMAD7, and IFNA6.
- Determined transcription factors FOXC1, USF2, GATA2, CREB1, E2F1, and TFAP2A (degree ≥5) regulate these genes.
- Established a significant genetic link between ferroptosis and microtia.
Conclusions:
- A notable genetic connection exists between ferroptosis and microtia.
- Further experimental validation is required to elucidate the precise genetic mechanisms of ferroptosis in microtia pathogenesis.
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