Related Experiment Video
Updated: Sep 18, 2025
Development of Compendium for Esophageal Squamous Cell Carcinoma
Published on: April 12, 2024
Identification of GBP6 as a potential prognostic biomarker in esophageal carcinoma by integrated bioinformatics
Shilin Fang1,2, Yang Ding3,4, Yifan Jia5
1Department of Infectious Disease, Hubei AIDS Clinical Training Center, Zhongnan Hospital of Wuhan University, Wuhan, China.
Backgrounds:
To evaluate the role of guanylate-binding protein 6 (GBP6) in esophageal cancer (ESCA).
Methods:
We comprehensively evaluated the expression pattern, clinical features, prognostic role, biological functions, and immunological role of GBP6 based on the public databases. Immunohistochemistry was used to validate the results in an ESCA tissue microarray. The proliferative activity of ESCA cells was evaluated using cell counting kit 8 assay. The cell cycle changes were determined using flow cytometry. We also analyzed potential compounds for combination therapy with GBP6.
Results:
Among the GBPs family, we found that GBP6 was only specifically expressed in the normal oropharyngeal tract, while its expression was downregulated in ESCA tissues. Patients with low expression of GBP6 was associated with poor prognosis, worse grade and TNM stage. However, no significant relationship between GBP6 and the immune microenvironment in ESCA. Enrichment analysis showed that GBP2-high expression group was significantly enriched in the p53 signaling pathway. Then, we found that knockdown of GBP6 expression inhibited the proliferative of ESCA cells and induced the cell cycle arrest. Moreover, the expression of p53, p21, and p27 were also downregulated in the GBP6 knockdown group. Finally, drug response prediction revealed that several small molecule compounds may have better anti-cancer effects in samples with high expression of GBP6.
Conclusion:
The GBP6 could be a potential prognostic therapeutic target for ESCA treatment.
