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A Dual-Feature Framework for Enhanced Diagnosis of Myeloproliferative Neoplasm Subtypes Using Artificial Intelligence
Amna Bamaqa1, N S Labeeb1,2, Eman M El-Gendy3
1Department of Computer Science and Information, Applied College, Taibah University, Madinah 42353, Saudi Arabia.
Bioengineering (Basel, Switzerland)
|June 26, 2025
Summary
This study introduces a new framework for diagnosing Philadelphia chromosome-negative myeloproliferative neoplasms by combining handcrafted and deep learning features. This integrated approach significantly improves classification accuracy for these challenging blood cancers.
Area of Science:
- Hematology
- Computational Pathology
- Machine Learning
Background:
- Philadelphia chromosome-negative (Ph-negative) myeloproliferative neoplasms (MPNs) like essential thrombocythemia, polycythemia vera, and primary myelofibrosis pose diagnostic challenges due to overlapping features.
- Current diagnostic methods (imaging, histopathology) suffer from interobserver variability and subjectivity, leading to delayed diagnoses.
Purpose of the Study:
- To develop and validate a novel computational framework for improved classification of Ph-negative MPNs.
- To integrate handcrafted and deep learning-based features for enhanced diagnostic accuracy.
Main Methods:
- A framework combining handcrafted (morphological, textural) and automatic (deep learning) feature extraction from histopathological images was developed.
- Machine learning models were trained using these features, with hyperparameter optimization via Optuna.
- Performance was evaluated using precision, recall, F1 score, accuracy, specificity, and weighted average.
Main Results:
- The integrated framework achieved a high mean weighted average of 0.9969, outperforming individual handcrafted (0.9765) and deep learning features (0.9686).
- Statistical analysis confirmed the robustness and reliability of the classification results.
- The combined approach demonstrated superior performance in classifying Ph-negative MPNs.
Conclusions:
- Combining domain-specific knowledge (handcrafted features) with data-driven approaches (deep learning) significantly enhances diagnostic accuracy for Ph-negative MPNs.
- This integrated framework offers a promising tool to support clinical decision-making and improve patient outcomes.
- Further research is needed to address challenges like feature distribution assumptions.

