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Updated: Sep 18, 2025

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Classifying sex with volume-matched brain MRI.

Matthis Ebel1, Martin Domin2, Nicola Neumann2

  • 1University of Greifswald, Institute of Mathematics and Computer Science, Greifswald, 17489, Germany.

Neuroimage. Reports
|June 26, 2025
PubMed
Summary
This summary is machine-generated.

Human brain scans accurately distinguish biological sex (>92%) when controlling for brain volume. Machine learning models show robust cross-cohort prediction and improved accuracy with larger training datasets.

Keywords:
Convolutional neural networkMachine learningPopulation based dataSex discriminationVoxel based morphometry

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Area of Science:

  • Neuroimaging
  • Machine Learning
  • Human Anatomy

Background:

  • Previous studies on sex differences in brain structure yielded small effect sizes.
  • Multivariate methods show promise in sex classification but often neglect brain volume control.
  • Lack of volume control raises questions about the validity of previous sex classification accuracies.

Purpose of the Study:

  • To determine the accuracy of sex classification from human brain gray matter properties while controlling for intracranial volume.
  • To assess the robustness of machine learning classifiers in cross-cohort predictions.
  • To investigate the impact of training set size and identify relevant brain regions for sex classification.

Main Methods:

  • Utilized MRI data from two population-based cohorts: Study of Health in Pomerania (SHIP) and Human Connectome Project (HCP).
  • Applied logistic regression and a 3D convolutional neural network (CNN) for sex classification.
  • Matched individuals on intracranial volume and performed cross-cohort validation.

Main Results:

  • Logistic regression achieved >92% accuracy in distinguishing sexes with matched intracranial volume in 1166 individuals.
  • The logistic regression model maintained 85% accuracy on an unseen cohort without retraining.
  • Classifier accuracy increased with training set size, surpassing 3000 individuals.
  • No single brain region dominated classification; important features were distributed across the brain.

Conclusions:

  • Accurate sex classification from brain gray matter is achievable when controlling for overall brain volume.
  • Machine learning models demonstrate significant cross-cohort generalizability and benefit from large training datasets.
  • Sex classification relies on distributed brain features rather than localized differences.