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Incorporating Neglected Insect Larvae in Species Inventories: DNA Barcoding as an Effective Tool for All-Stage
Lucas Sire1,2, Chloé Martin2, Guilhem Parmain3
1Institut de Systématique, Évolution, Biodiversité (ISYEB), UMR7205 Muséum National d'Histoire Naturelle, CNRS Sorbonne Université, EPHE, Université des Antilles Paris France.
Ecology and Evolution
|June 26, 2025
Summary
DNA barcoding effectively identifies invertebrates in tree holes, revealing hidden larval diversity crucial for forest ecosystem monitoring. This method enhances biodiversity assessments and highlights the need for updated DNA reference libraries.
Area of Science:
- Ecology
- Molecular Biology
- Forest Science
Background:
- Invertebrates, particularly insects, are vital for forest biodiversity and ecosystem functions like decomposition.
- Global changes threaten insect diversity, necessitating robust long-term biomonitoring strategies.
- Tree-related microhabitats (TReMs), such as tree holes, harbor significant but often overlooked biodiversity.
Purpose of the Study:
- To assess invertebrate biodiversity in French forest tree holes using DNA barcoding.
- To overcome limitations of traditional morphological identification for larval stages.
- To integrate hidden invertebrate diversity into long-term monitoring programs.
Main Methods:
- DNA barcoding was employed to identify invertebrate species from tree hole samples.
- Morphological identification challenges, especially for larvae, were addressed.
- Data were analyzed to determine species identification rates and the proportion of larval discoveries.
Main Results:
- DNA barcoding successfully identified nearly 62% of sampled invertebrates to the species level.
- Of the sampled invertebrates, 44% were larvae, with nearly 50% of these identified to species.
- The study identified 108 species and 173 barcode index numbers (BINs), with 39% of species exclusively found as larvae.
Conclusions:
- DNA-based identification is highly effective for surveying invertebrate biodiversity in microhabitats like tree holes.
- Including larval stages in biodiversity assessments is essential for accurate species abundance and functional diversity insights.
- Continued development of DNA reference libraries and non-destructive methods is crucial for precise biomonitoring.

