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Evaluation of Six Commercial and Noncommercial Colistin Resistance Diagnostics
Tumisho Mmatumelo Seipei Leshaba1, Masego Mmatli1, Nontombi Marylucy Mbelle1
1Department of Medical Microbiology, School of Medicine, University of Pretoria, Pretoria, South Africa.
Abstract:
Resistance to colistin, a last-reserve antibiotic used for treating drug-resistant infections, is rising globally. We compared six commercial and in-house diagnostics-ComASP colistin, CHROMagar COL-APSE, rapid polymyxin NP (Nordmann/Poirel) test, Sensititre, MicroScan, and Vitek 2-against ISO-standard broth microdilution (BMD) using 142 Gram-negative isolates. The isolates (Enterobacterales = 110, Acinetobacter baumannii = 21, Pseudomonas aeruginosa = 11) underwent BMD and conventional multiplex PCR screening for mcr-1-mcr-5. Sensitivity, specificity, categorical agreement (CA), major error (ME), and very major error (VME) were calculated for each test. Vitek 2 and sensititre yielded the highest CA (≥ 98%) and the lowest VME (≤ 0.0%) across taxa. ComASP showed excellent performance for A. baumannii (100% sensitivity/specificity) but slightly lower CA for P. aeruginosa (73%). CHROMagar COL-APSE demonstrated acceptable sensitivity (92%) but low specificity (69%) in Enterobacterales. MicroScan had reduced specificity in Enterobacterales (87.80%). The CHROMAgar COL-APSE efficiently identified the species with their unique colours but was the least specific (68.63%), with the highest ME in Enterobacterales. The rapid NP test provided rapid results within 4 h but showed a relatively high VME (7.84%), despite maintaining an acceptable sensitivity (92.16%) and specificity (96.08%). For laboratories with automated platforms, Vitek 2 remains optimal for colistin MIC testing; Sensititre and ComASP are suitable low-cost BMD alternatives. The Rapid NP test provides a same-day screen, but confirmatory MIC testing is advised. CHROMagar COL-APSE should be used with a ≤ 1 CFU mL⁻¹ inoculum to minimise false resistance calls. Knowing the comparative performance of these different tests will assist in choosing the best test for every species, improving on efficient diagnosis and healthcare outcomes.
Insights
Colistin resistance is rising globally. Vitek 2 and Sensititre offer the best performance for colistin minimum inhibitory concentration (MIC) testing, while Rapid NP provides a quick screen.
Area of Science:
- Clinical Microbiology
- Antimicrobial Resistance
- Diagnostic Test Evaluation
Background:
- Colistin is a critical last-resort antibiotic for treating multidrug-resistant Gram-negative infections.
- Rising global colistin resistance necessitates accurate and efficient diagnostic methods.
- Several commercial and in-house diagnostic tests are available for detecting colistin resistance.
Purpose of the Study:
- To evaluate and compare the performance of six colistin resistance diagnostics against a gold standard.
- To determine the sensitivity, specificity, categorical agreement, and error rates of each test.
- To guide the selection of appropriate diagnostic tools for clinical laboratories.
Main Methods:
- Broth microdilution (BMD) according to ISO standards was used as the reference method.
- 142 Gram-negative isolates (Enterobacterales, Acinetobacter baumannii, Pseudomonas aeruginosa) were tested.
- Multiplex PCR screening for mcr genes (mcr-1 to mcr-5) was performed.
Main Results:
- Vitek 2 and Sensititre demonstrated the highest categorical agreement (≥98%) and no very major errors.
- ComASP showed excellent performance for Acinetobacter baumannii but lower agreement for Pseudomonas aeruginosa.
- CHROMagar COL-APSE had low specificity (69%) and high major errors in Enterobacterales; Rapid NP test showed a high very major error rate (7.84%).
Conclusions:
- Vitek 2 and Sensititre are optimal for colistin MIC testing, with ComASP as a cost-effective alternative.
- The Rapid NP test offers rapid screening but requires confirmatory MIC testing.
- CHROMagar COL-APSE requires careful inoculum control to minimize false resistance detection.
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