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Updated: Sep 17, 2025

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Single Cell Collection of Trophoblast Cells in Peri-implantation Stage Human Embryos
Published on: June 12, 2020
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Single-cell transcriptomics reveal differences between chorionic and basal plate cytotrophoblasts and trophoblast
Mana Parast1,2,3, Robert Morey1,2,3, Francesca Soncin1,2,3
1Department of Pathology, School of Medicine, University of California San Diego, La Jolla, 92093, CA, USA.
Research Square
|June 30, 2025
Summary
Human placental cytotrophoblast (CTB) cells exhibit distinct states based on location and gestational age. Current trophoblast stem cell (TSC) lines resemble CTB biased toward the extravillous trophoblast (EVT) lineage.
Area of Science:
- Human placental development
- Trophoblast biology
- Stem cell research
Background:
- Cytotrophoblast (CTB) cells are bipotent progenitors in early human placenta, differentiating into invasive extravillous trophoblast (EVT) and syncytiotrophoblast (STB).
- The cell-of-origin for trophoblast stem cells (TSC) remains unidentified, despite their bipotentiality.
Purpose of the Study:
- To investigate the transcriptional diversity of early and late first trimester villous CTB (vCTB).
- To compare vCTB transcriptional profiles with trophoblast stem cells (TSC).
- To identify distinct CTB states and their relationship to TSC and differentiation potential.
Main Methods:
- Single-cell RNA sequencing (scRNA-seq) of placental villous tissue from early (6-8 weeks) and late (12-14 weeks) first trimester.
- scRNA-seq and GeoMx spatial transcriptomics of CTB from basal and chorionic regions of early placenta.
- scRNA-seq of TSC lines and CTB during TSC derivation.
- Flow cytometry analysis of TSC lines for specific markers.
Main Results:
- CTB clusters showed distinctions based on gestational age and location (basal vs. chorionic plate).
- Identified trophoblast states including 'initial state' vCTB, CTB subtypes, precursor STB, and precursor/mature EVT.
- CTB progenitors were enriched in early basal plate, with basal CTB biased toward EVT and chorionic CTB toward STB precursors.
- TSC clustered most closely with EVT precursor cells and lost specific in vivo markers (e.g., PAGE4) during in vitro culture.
- ITGA5+ CTB could form EVT in 2D culture but not organoids, while ITGA5- CTB formed organoids but not EVT in 2D.
Conclusions:
- Distinct CTB states exist regionally in the placenta as early as six weeks gestation.
- Current TSC lines are transcriptionally similar to ITGA5+ CTB, biased toward the EVT lineage.
- Cell surface markers like ITGA5 differentiate CTB with distinct self-renewal and differentiation potentials.
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