A novel and complex chromosomal variation in a child with developmental delay: A case report

Hong Chang1, Xiaohang Hu, Xinke Chen

  • 1Department of Medical Laboratory, Affiliated Hospital of Jining Medical University, Jining, Shandong Province, China.

Medicine
|June 30, 2025
PubMed

Insights

This study reports a novel complex chromosomal rearrangement in a young boy with short stature and developmental delay. The findings contribute to understanding genetic disorders and rare chromosomal abnormalities.

Area of Science:

  • Genetics
  • Human Biology
  • Medical Science

Background:

  • Chromosomal variations significantly impact phenotypes based on size and genomic location.
  • Complex chromosomal rearrangements are rare but can lead to diverse clinical manifestations.
  • This report details a previously undocumented complex chromosomal rearrangement.

Purpose of the Study:

  • To present a novel case of complex chromosomal rearrangement.
  • To describe the associated clinical phenotype and genetic findings.
  • To contribute to the understanding of chromosomal abnormalities and their impact.

Main Methods:

  • Karyotyping (G-banding) and copy number variation sequencing were performed.
  • Detailed analysis of structural anomalies including ring chromosome 1, translocations, and deletions.
  • Phenotypic evaluation included growth, developmental, and hormonal assessments.

Main Results:

  • A male karyotype (46, XY) with multiple structural anomalies was identified: r(1)(p13q32), t(6;21)(q21;q22), der(14)t(1;14)(p13;p12), and der(15)t(1;15)(q32;p12).
  • Copy number variation sequencing detected deletions: del(1)(q31.3q32.1), del(1)(q32.1), and del(6)(q14.1).
  • The patient presented with short stature, growth delay, sinus tachycardia, arrhythmia, hematuria, developmental delay, intellectual disability, and reduced growth hormone levels.

Conclusions:

  • This case represents a novel complex chromosomal rearrangement involving five chromosomes.
  • The findings highlight the intricate relationship between chromosomal abnormalities and phenotypic expression.
  • This documentation serves as a foundation for future research on related genetic disorders.
Abstract

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