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Targeted Labeling of Neurons in a Specific Functional Micro-domain of the Neocortex by Combining Intrinsic Signal and Two-photon Imaging
Published on: December 12, 2012
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Closed-loop two-photon functional imaging in a freely moving animal
Paul McNulty1, Rui Wu1, Akihiro Yamaguchi1
1Department of Physics, New York University, New York, NY, USA.
Nature Communications
|July 2, 2025
Summary
We developed a new high-speed two-photon microscope to accurately measure neural activity in freely moving animals. This technology overcomes motion artifacts, enabling new discoveries in brain function and behavior.
Area of Science:
- Neuroscience
- Biophysics
- Microscopy
Background:
- Direct measurement of neural activity in freely moving animals is crucial for understanding brain function.
- Brain motion, scattering, and autofluorescence complicate quantitative fluorescence measurements.
- Existing two-photon microscopy requires brain anchoring, limiting applications in unrestrained subjects.
Purpose of the Study:
- To develop a novel microscopy technique for real-time 3D motion correction in unrestrained, freely moving animals.
- To enable quantitative functional imaging of neural activity despite significant brain motion.
- To discover novel neural correlates of behavior in Drosophila larvae.
Main Methods:
- Development of a closed-loop resonant axial-scanning high-speed two-photon (CRASH2p) microscope.
- Implementation of a 'Pong' scanning strategy and a multi-stage registration pipeline for motion correction.
- Volumetric ratiometrically corrected functional imaging in the central nervous system (CNS) of Drosophila larvae.
Main Results:
- Successfully performed real-time 3D motion correction in unrestrained Drosophila larvae without reference markers.
- Achieved quantitative, volumetric, ratiometrically corrected functional imaging of neural activity.
- Discovered previously unknown neural activity patterns associated with larval behavior.
Conclusions:
- The CRASH2p microscope effectively overcomes motion artifacts in in vivo neural imaging.
- This technology provides a powerful tool for studying neural circuits controlling behavior in freely moving organisms.
- The findings open new avenues for investigating brain function and neural representations of behavior.

