Codon-deoptimized single-round infectious virus for therapeutic and vaccine applications

Takafumi Noguchi1,2, Anju Miyamori1, Takeshi Sugimoto1,2

  • 1Virus Vaccine Group, BIKEN Innovative Vaccine Research Alliance Laboratories, Institute for Open and Transdisciplinary Research Initiatives, The University of Osaka, Suita, Osaka, Japan.

Scientific Reports
|July 2, 2025
PubMed

Insights

Scientists engineered a safer Coxsackievirus B3 (CVB3) vaccine by deoptimizing its genes. This approach reduces the virus

Area of Science:

  • Virology
  • Immunology
  • Vaccine Development

Background:

  • Coxsackievirus B3 (CVB3) causes severe myocarditis and pancreatitis, especially in neonates, with high mortality.
  • Current preventive strategies and treatments for CVB3 infections are lacking.
  • Live-attenuated vaccines are promising but require careful control of pathogenicity without sacrificing immunogenicity.

Purpose of the Study:

  • To investigate codon deoptimization and defective viral genomes (DVGs) as strategies to modulate CVB3 pathogenicity.
  • To preserve the immune-activating capacity of CVB3 while reducing its harmful effects.
  • To develop safer and effective live-attenuated vaccine candidates and therapeutic agents against CVB3.

Main Methods:

  • Engineered codon-deoptimized CVB3 variants with increased CpG dinucleotide content in the 3CD region.
  • Assessed the pathogenicity and immunogenicity of these modified CVB3 strains.
  • Generated and evaluated DVGs derived from both codon-deoptimized and wild-type CVB3 (CVB3WT).

Main Results:

  • Codon-deoptimized CVB3s showed attenuated pathogenicity, directly correlated with the degree of deoptimization.
  • These modified CVB3s successfully induced protective immunity against CVB3WT infection.
  • DVGs from codon-deoptimized CVB3 exhibited enhanced viral interference and stimulated greater neutralizing antibody production compared to DVGs from CVB3WT.

Conclusions:

  • CpG-enriched genomes and DVGs are effective tools for regulating viral pathogenicity.
  • These strategies enhance vaccine safety and immunogenicity for potential live-attenuated vaccines.
  • The findings support the development of novel therapeutic strategies against viral infections like CVB3.