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Updated: Jul 12, 2026

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
The microbiome of pseudomyxoma peritonei: a scoping review
D Sara Portela1, Anshini Jain1, Michael Flood1
1Peter MacCallum, Melbourne, Australia.
Abstract:
There is growing interest in the role of the microbiome in carcinogenesis, but few studies examine the microbiome of pseudomyxoma peritonei (PMP). This scoping review summarises the microorganisms identified in PMP samples and examines the evidence of their role in disease outcomes. The methodology was developed in accordance with the PRISMA-ScR framework and checklist. Nine relevant studies were included. Microbiological testing was performed on PMP samples from 85 patients. At the phylum level, Proteobacteria was detected in greatest relative abundance in tumour tissue, cellular and acellular mucin. The relative proportion of different phyla more closely resembled the gut microbiome in inflammatory bowel disease than in a healthy gut. High-grade specimens showed significantly higher bacterial density than low-grade specimens and non-neoplastic non-perforated appendix specimens. Survival data of 58 patients were published, correlating outcomes to pre-operative antibiotic administration. Observed differences were not statistically significant. There is evidence of an altered bacterial profile in PMP samples compared to a healthy gut microbiome, the significance of which is unclear. Significant methodological challenges remain in this field of study. This scoping review supports the need for further analysis of the PMP bacterial profile, using methodologies that incorporate controls and deliver taxonomic resolution at species level.
Insights
The microbiome in pseudomyxoma peritonei (PMP) differs from a healthy gut, with higher bacterial density in high-grade PMP. Further research is needed to clarify the role of these gut bacteria in PMP outcomes.
Area of Science:
- Oncology
- Microbiology
- Gastroenterology
Background:
- Growing interest in the microbiome's role in cancer.
- Limited research on the pseudomyxoma peritonei (PMP) microbiome.
- PMP is a rare malignancy of the appendix.
Purpose of the Study:
- To review and summarize microorganisms identified in PMP samples.
- To examine the evidence linking PMP microorganisms to disease outcomes.
- To identify research gaps and methodological challenges in PMP microbiome studies.
Main Methods:
- Scoping review following the PRISMA-ScR framework.
- Inclusion of nine relevant studies.
- Analysis of microbiological data from 85 PMP patients.
Main Results:
- Proteobacteria showed the highest relative abundance in PMP samples.
- PMP microbiome composition resembled the gut microbiome in inflammatory bowel disease.
- Higher bacterial density was observed in high-grade PMP specimens.
- No statistically significant correlation found between pre-operative antibiotics and survival outcomes.
Conclusions:
- PMP samples exhibit an altered bacterial profile compared to a healthy gut.
- The clinical significance of the PMP microbiome remains unclear.
- Methodological challenges, including lack of controls and low taxonomic resolution, hinder PMP microbiome research.
Related Concept Videos
Introduction to the Human Microbiota
The Oral Microbiota
Microbiota of the Stomach and Small Intestine
Microbiota of the Large Intestine
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Microbiota of the Urogenital Tract

