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Genotypic Inference of HIV-1 Tropism Using Population-based Sequencing of V3
Published on: December 27, 2010
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HIV-1 testing in the context of expanding PrEP modalities
Urvi M Parikh1, Jana L Jacobs1, Njambi Njuguna2
1Division of Infectious Diseases, Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Journal of the International AIDS Society
|July 2, 2025
Summary
Accurate HIV-1 testing is crucial for the safe rollout of pre-exposure prophylaxis (PrEP). Current strategies vary, and challenges include rare breakthrough infections and modified acute HIV infection presentations in PrEP users.
Area of Science:
- Infectious Diseases
- Public Health
- Virology
Background:
- Effective antiretroviral-based pre-exposure prophylaxis (PrEP) for HIV-1 prevention is available, necessitating robust HIV-1 testing strategies for safe implementation.
- Current HIV-1 testing guidelines and algorithms for PrEP studies are diverse, employing antibody tests, nucleic acid tests, and retrospective analyses.
- Varied testing approaches pose challenges in accurately identifying rare HIV-1 acquisitions among individuals using PrEP.
Purpose of the Study:
- To summarize current and alternative HIV-1 testing approaches for effective PrEP implementation.
- To guide best practices for HIV-1 testing programs supporting PrEP use.
- To address the complexities of diagnosing HIV-1 in PrEP users, including rare breakthrough infections and modified acute HIV infection.
Main Methods:
- Review and synthesis of existing HIV-1 testing strategies, including rapid antibody tests, nucleic acid tests (qualitative and quantitative), and sensitive research assays.
- Discussion of the World Health Organization (WHO) recommendations for HIV-1 testing in PrEP users.
- Consideration of diagnostic challenges such as false-positive results and the impact of PrEP on HIV-1 presentation.
Main Results:
- Current best practices recommend rapid diagnostic tests or self-testing, aligned with national guidelines and WHO recommendations.
- Nucleic acid testing (e.g., plasma HIV-1 RNA PCR) may offer earlier detection but faces challenges in feasibility and potential for false positives.
- Sensitive assays for single-copy HIV-1 RNA and proviral DNA are valuable for resolving ambiguous diagnoses in research settings.
Conclusions:
- Diagnosing HIV-1 in PrEP users is complex due to rare breakthrough infections, PrEP's effect on acute infection, and infrastructure limitations.
- Optimal HIV-1 detection strategies for various PrEP modalities are evolving, with ongoing assessment of different tests and approaches.
- Cost, feasibility, and the positive predictive value of HIV tests are critical factors for successful PrEP programs.

