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Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments
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Functional team selection as a framework for local adaptation in plants and their belowground microbiomes.
Nancy Collins Johnson1,2, César Marín3,4
1Department of Biological Sciences, Northern Arizona University, 617 S Beaver St., Flagstaff, AZ 86011, United States.
The ISME Journal
|July 2, 2025
Summary
Plants can adapt to local environments by cultivating beneficial microbes within their root microbiomes. This review proposes a functional team selection framework to predict when plant-microbiome interactions drive local adaptation.
Area of Science:
- Plant biology
- Microbiology
- Ecology
Background:
- Multicellular organisms host diverse microbiomes, with plant microbiomes influencing nutrition, defense, and stress tolerance.
- Belowground microbiomes can facilitate plant adaptation to local environments under specific conditions.
- Understanding these interactions is crucial for agricultural applications and managing host-microbe systems.
Purpose of the Study:
- To develop a functional team selection (FTS) framework for predicting conditions under which root microbiomes promote local adaptation in plants.
- To view plants and their microbiomes as complex adaptive systems where plant adaptations emerge from these interactions.
Main Methods:
- Conceptual review and framework development.
- Analysis of plant-microbiome interactions as emergent properties of complex adaptive systems.
- Identification of key factors influencing microbiome-mediated plant adaptation: selective force, host constitution, microbial diversity, and time.
Main Results:
- The FTS framework posits that plants can evolve adaptation by actively curating their microbiomes.
- In stressful or resource-limited environments, microbial communities can create positive feedback loops enhancing plant vigor and local adaptation.
- The framework integrates host recognition of microbes and microbial community dynamics.
Conclusions:
- The FTS framework offers a predictive model for developing robust plant-microbiome systems in agriculture.
- This approach may improve crop production, reduce pathogen impact, and enhance the efficacy of microbial inoculants.
- Insights from FTS can advance the understanding and management of diverse host-microbe interactions beyond plants.
Keywords:
complex adaptive systemscry-for-help hypothesishost-mediated microbiome engineeringlaw of increasing functional informationlocal adaptationmycorrhizaeniche construction theoryplant growth-promoting bacteriaplant–soil-feedbacksyntrophyMore Related Videos
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