Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Survival Tree01:19

Survival Tree

157
Survival trees are a non-parametric method used in survival analysis to model the relationship between a set of covariates and the time until an event of interest occurs, often referred to as the "time-to-event" or "survival time." This method is particularly useful when dealing with censored data, where the event has not occurred for some individuals by the end of the study period, or when the exact time of the event is unknown.
 Building a Survival Tree
Constructing a...
157
Statistical Inference Techniques in Hypothesis Testing: Parametric Versus Nonparametric Data01:16

Statistical Inference Techniques in Hypothesis Testing: Parametric Versus Nonparametric Data

207
Statistical inference techniques, paramount in hypothesis testing, differentiate into two broad categories: parametric and nonparametric statistics.
Parametric statistics, as the name suggests, assumes that data follow a specific distribution, often a normal distribution. This assumption enables robust hypothesis testing and estimation. Parametric methods, like the Student's t-test or Goodness-of-fit test, are frequently employed in biostatistics due to their robustness. For instance,...
207
Improving Translational Accuracy02:07

Improving Translational Accuracy

11.8K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
11.8K
Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving

100
Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
100
Regression Analysis01:11

Regression Analysis

6.0K
Regression analysis is a statistical tool that describes a mathematical relationship between a dependent variable and one or more independent variables.
In regression analysis, a regression equation is determined based on the line of best fit– a line that best fits the data points plotted in a graph. This line is also called the regression line. The algebraic equation for the regression line is called the regression equation. It is represented as:
6.0K
Residuals and Least-Squares Property01:11

Residuals and Least-Squares Property

7.8K
The vertical distance between the actual value of y and the estimated value of y. In other words, it measures the vertical distance between the actual data point and the predicted point on the line
If the observed data point lies above the line, the residual is positive, and the line underestimates the actual data value for y. If the observed data point lies below the line, the residual is negative, and the line overestimates the actual data value for y.
The process of fitting the best-fit...
7.8K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Correction to "Enhanced Antibacterial Efficacy of Copper Single-Atom Catalysts on Two-Dimensional Boron Nitride Platform".

ACS nano·2026
Same author

Leveraging Polymorphism in YbCuBi to Map Transport and Elastic Properties.

Chemistry of materials : a publication of the American Chemical Society·2026
Same author

A first-principles theoretical study on two-dimensional MX and MX<sub>2</sub> metal halides: bandgap engineering, magnetism, and catalytic descriptors.

Physical chemistry chemical physics : PCCP·2026
Same author

Enhanced Activity in Layered Metal-Oxide-Based Oxygen Evolution Catalysts by Layer-by-Layer Modulation of Metal-Ion Identity.

ACS catalysis·2025
Same author

Enhanced Antibacterial Efficacy of Copper Single-Atom Catalysts on a Two-Dimensional Boron Nitride Platform.

ACS nano·2025
Same author

How can we engineer electronic transitions through twisting and stacking in TMDC bilayers and heterostructures? a first-principles approach.

Nanoscale advances·2025
Same journal

Complementing Onsager's Conductivity Theory by Grotthuss Mechanism Mitigation via Ion-Induced Depletion of Hydrogen-Bond-Donating Water.

Journal of chemical theory and computation·2026
Same journal

Microscopic Stress in Biomembranes: A Perspective on Key Concepts, Methods, and Applications.

Journal of chemical theory and computation·2026
Same journal

Analytic Nuclear Gradients Including Oriented External Electric Fields in a Molecule-Fixed Frame.

Journal of chemical theory and computation·2026
Same journal

Knowledge Distillation of a Protein Language Model Yields a Foundational Implicit Solvent Model.

Journal of chemical theory and computation·2026
Same journal

Generalizable Protein Folding Pathway Exploration with DA2-GRASP: Extending Beyond Miniproteins.

Journal of chemical theory and computation·2026
Same journal

Improving PCM in Protic Media: Markov State Models for TD-DFT Calculations.

Journal of chemical theory and computation·2026
See all related articles

Related Experiment Video

Updated: Sep 8, 2025

P300-Based Brain-Computer Interface Speller Performance Estimation with Classifier-Based Latency Estimation
06:09

P300-Based Brain-Computer Interface Speller Performance Estimation with Classifier-Based Latency Estimation

Published on: September 8, 2023

667

Does Hessian Data Improve the Performance of Machine Learning Potentials?

Austin Rodriguez1, Justin S Smith2, Jose L Mendoza-Cortes1,3

  • 1Department of Chemical Engineering & Materials Science, Michigan State University, East Lansing, Michigan 48824, United States.

Journal of Chemical Theory and Computation
|July 2, 2025
PubMed
Summary
This summary is machine-generated.

Integrating Hessian matrix training into Machine Learning Interatomic Potentials (MLIPs) enhances extrapolation to new molecular systems. This improves reaction modeling and vibrational analysis, though it increases computational cost.

More Related Videos

A Psychophysics Paradigm for the Collection and Analysis of Similarity Judgments
08:12

A Psychophysics Paradigm for the Collection and Analysis of Similarity Judgments

Published on: March 1, 2022

2.6K
Augmenting Large Language Models via Vector Embeddings to Improve Domain-Specific Responsiveness
03:14

Augmenting Large Language Models via Vector Embeddings to Improve Domain-Specific Responsiveness

Published on: December 6, 2024

680

Related Experiment Videos

Last Updated: Sep 8, 2025

P300-Based Brain-Computer Interface Speller Performance Estimation with Classifier-Based Latency Estimation
06:09

P300-Based Brain-Computer Interface Speller Performance Estimation with Classifier-Based Latency Estimation

Published on: September 8, 2023

667
A Psychophysics Paradigm for the Collection and Analysis of Similarity Judgments
08:12

A Psychophysics Paradigm for the Collection and Analysis of Similarity Judgments

Published on: March 1, 2022

2.6K
Augmenting Large Language Models via Vector Embeddings to Improve Domain-Specific Responsiveness
03:14

Augmenting Large Language Models via Vector Embeddings to Improve Domain-Specific Responsiveness

Published on: December 6, 2024

680

Area of Science:

  • Computational chemistry
  • Materials science
  • Drug discovery

Background:

  • Machine Learning Interatomic Potentials (MLIPs) predict energies and forces with quantum accuracy.
  • Force fitting in MLIP training improves potential-energy surface predictions.
  • Hessian matrix training encodes second-order information about the potential energy surface (PES) curvature.

Purpose of the Study:

  • To evaluate the integration of Hessian matrix training in MLIPs.
  • To assess the impact of Hessian training on extrapolation to nonequilibrium geometries.
  • To analyze the benefits and limitations of Hessian integration in MLIPs for various computational chemistry applications.

Main Methods:

  • Training MLIPs with varying combinations of energy, force, and Hessian data.
  • Evaluating model performance on equilibrium and first-order saddle point geometries.
  • Testing extrapolation capabilities to nonequilibrium geometries using a small molecule reactive dataset.

Main Results:

  • Hessian-trained MLIPs demonstrate improved extrapolation to unseen molecular systems.
  • Hessian integration enhances accuracy in reaction pathway modeling and vibrational spectra prediction.
  • Hessian training can reduce the total data required for effective MLIP models, despite increased computational expense.

Conclusions:

  • Hessian integration in MLIPs offers significant advantages for predicting molecular properties and reaction dynamics.
  • Practitioners should weigh the benefits of improved accuracy and data efficiency against the increased computational cost.
  • This work provides insights for informed decisions on employing Hessian-trained MLIPs in computational chemistry research.