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Protocol for generating and using human iPSC-derived microglia-containing air-liquid-interface cortical organoid
Marta Cañizares Luna1, Mayte Mars1, Channa E Jakobs1
1Department of Translational Neuroscience, UMC Utrecht Brain Center, University Medical Center Utrecht, Utrecht University, Utrecht 3584 CG, the Netherlands.
STAR Protocols
|July 2, 2025
Summary
We developed a protocol for long-term microglia-containing organoid cultures that reduces cell death. This new method supports microglia survival and homeostasis for studying neuroimmune interactions in a 3D brain model.
Area of Science:
- Neuroscience
- Immunology
- Stem Cell Biology
Background:
- Extended organoid cultures often suffer from necrotic core formation, limiting their utility for studying long-term cellular processes.
- Microglia, the resident immune cells of the brain, are crucial for neurodevelopment and disease, but their survival in traditional organoid models is challenging.
Purpose of the Study:
- To present a novel protocol for generating microglia-containing air-liquid-interface cortical organoids (MG-ALI-COs) capable of long-term culture.
- To overcome limitations of necrotic core formation and enhance microglia survival and homeostasis in 3D brain models.
- To provide a physiologically relevant platform for investigating human neuroimmune interactions.
Main Methods:
- Generation of air-liquid-interface cortical organoids (ALI-COs).
- Integration of macrophage precursors into ALI-COs to generate MG-ALI-COs.
- Maintenance and long-term culture of MG-ALI-COs.
- Experimental analyses including immunostaining, imaging, and patch-clamp electrophysiology.
Main Results:
- The protocol successfully generated long-term MG-ALI-CO cultures.
- Minimized necrotic core formation, promoting microglia survival and homeostasis.
- Demonstrated the utility of MG-ALI-COs for various experimental analyses.
Conclusions:
- The developed MG-ALI-CO model offers a robust system for studying microglia in a 3D, brain-like environment.
- This model facilitates research into human neuroimmune interactions over extended periods.
- The protocol addresses key limitations in current organoid technology for neuro-immunological studies.
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