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Influence of cognitive networks and task performance on fMRI-based state classification using DNN models.

Murat Kucukosmanoglu1, Javier O Garcia2, Justin Brooks1,3,4

  • 1D-Prime LLC, McLean, VA, 22101, USA.

Scientific Reports
|July 2, 2025
PubMed
Summary

Interpretable deep neural networks (DNNs) successfully classified cognitive states from fMRI data, linking classification accuracy to individual task performance. Visual networks were key to differentiating cognitive states.

Keywords:
Brain networksCognitive state classificationDeep neural networksExplainable AIFeature importance

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Area of Science:

  • Cognitive Neuroscience
  • Machine Learning
  • Neuroimaging

Background:

  • Deep neural networks (DNNs) offer powerful data analysis but lack interpretability in cognitive neuroscience.
  • Limited interpretability hinders the application of DNNs for understanding cognitive mechanisms from neuroimaging data.

Purpose of the Study:

  • To apply interpretable DNNs for classifying cognitive task states from fMRI data.
  • To investigate the cognitive underpinnings and individual variability in task performance using DNNs.

Main Methods:

  • Employed a 1D convolutional neural network (1D-CNN) and a bidirectional long short-term memory (BiLSTM) network.
  • Classified cognitive task states from fMRI data, analyzing feature importance and model performance.
  • Correlated classification accuracy with individual cognitive performance metrics.

Main Results:

  • 1D-CNN achieved 81% accuracy (Macro AUC=0.96), BiLSTM achieved 78% (Macro AUC=0.95).
  • Both models showed significant correlation between prediction accuracy and individual cognitive performance (p<0.05 for 1D-CNN, p<0.001 for BiLSTM).
  • Feature importance highlighted visual networks, with attention and control networks also showing high relevance. Lower accuracy correlated with poorer performance.

Conclusions:

  • Interpretable DNNs can effectively classify cognitive states from fMRI data.
  • Task-related neural activity, particularly in visual networks, is crucial for state classification.
  • DNNs reveal relationships between neural activity, cognitive performance, and individual differences.