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Updated: Sep 17, 2025

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
The anticancer potential of Origanum onites L. in gastric cancer through epigenetic alterations
Fatma Sogutlu1, Mert Pekerbas2,3, Gulsum Boztas4
1Department of Medical Biology, Faculty of Medicine, Ege University, Izmir, Turkey.
Background:
Epigenetic alterations are crucial in gastric cancer (GC) development and progression. As these modifications are reversible, targeting them may offer preventive and therapeutic benefits. Origanum onites L. essential oil (OOEO) has demonstrated anticancer properties in various cancers, but its epigenetic effects in GC remain unexplored.
Methods:
OOEO was extracted by water distillation, and its effects on gastric adenocarcinoma (AGS) and normal gastric epithelial (GES-1) cells were evaluated. Cytotoxicity was assessed via WST-8 assay, apoptosis by Annexin V staining, DNA damage by γ-H2AX test, and epigenetic modifications by methylation-specific PCR and histone modification analysis.
Results:
Compared to GES-1 cells, OOEO exhibited cytotoxic activity even at lower concentrations in AGS cells. OOEO treatment induced apoptosis and DNA double-strand breaks and arrested cell cycle at S and G2/M phases compared to the untreated group. OOEO also caused a decrease in promoter methylation of LOX, TIMP3, CDH1 and RARB genes and was found to globally alter 16 histone modifications in AGS cells and 19 histone modifications in GES-1 cells. OOEO contributed to the reorganization of H3K9ac modification in the promoters of CDKN1A, MYC, RUNX3, RASSF1 and CDH1 genes and H3K27me3 modification in the promoters of CDKN1A and MYC genes.
Conclusion:
OOEO exhibits epigenetic regulatory properties that may contribute to GC prevention and treatment. Its potential in neoadjuvant or combinatory therapies warrants further investigation.
Insights
Origanum onites L. essential oil (OOEO) shows potential for gastric cancer (GC) prevention and treatment by altering epigenetic modifications. This natural compound exhibits anticancer properties, including cytotoxicity and apoptosis induction in GC cells.
Area of Science:
- Oncology
- Epigenetics
- Natural Products Chemistry
Background:
- Epigenetic alterations are key drivers in gastric cancer (GC) development.
- Reversible epigenetic modifications present therapeutic and preventive opportunities.
- Origanum onites L. essential oil (OOEO) has shown anticancer effects, but its role in GC epigenetics is unknown.
Purpose of the Study:
- To investigate the epigenetic effects of Origanum onites L. essential oil (OOEO) in gastric cancer (GC).
- To evaluate OOEO's potential for GC prevention and therapy.
Main Methods:
- OOEO was extracted via water distillation.
- Cytotoxicity, apoptosis, DNA damage, and epigenetic modifications (DNA methylation, histone modifications) were assessed in gastric adenocarcinoma (AGS) and normal gastric epithelial (GES-1) cells.
Main Results:
- OOEO demonstrated selective cytotoxicity against AGS cells.
- OOEO induced apoptosis, DNA double-strand breaks, and cell cycle arrest in AGS cells.
- OOEO altered DNA methylation patterns and global histone modifications, including H3K9ac and H3K27me3, in GC cells.
Conclusions:
- OOEO possesses epigenetic regulatory properties beneficial for GC management.
- Further research into OOEO for neoadjuvant or combination therapies is warranted.
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