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Characterize Disease-related Mutants of RAF Family Kinases by Using a Set of Practical and Feasible Methods
Published on: July 17, 2019
Genetic and oncogenic features of RASGRF fusions
Sreya Das1,2,3, Daniel S Lenchner1,2,3, Ellen Jaeger4
1Department of Internal Medicine, Section of Medical Oncology, Yale School of Medicine, New Haven, CT, USA.
Abstract:
The identification of recurrent oncogenic drivers has enabled targeted therapeutic strategies for subsets of non-small cell lung carcinoma (NSCLC) and other malignancies. Oncogenic fusions involving the RAS-activating guanine exchange factor (GEF) RASGRF1 are reported in multiple tumors, but their prevalence and genetic heterogeneity remain undefined. Here, we query RNA-seq data from a real-world database of diverse human malignancies and identify 40 tumors with rearrangements involving RASGRF1 or the related RASGRF2 predicted to generate chimeric proteins. Half of these fusions occur in NSCLC, pancreatic cancer, and melanoma and are enriched in tumors without other established driver alterations. A subset of RASGRF fusions contains transmembrane partners, and membrane localization enhances RAS activation and transforming activity. Loss of N-terminal PH1 and DH domains in RASGRF fusions also promotes transformation. Although some fusions lack the PH1 but not the DH domain, our functional assays indicate that loss of the PH1 domain alone is insufficient to drive cellular transformation. Our findings provide insights about the tissue distribution, structural diversity, and oncogenic mechanisms of RASGRF fusions. As cell models driven by these fusions are sensitive to MAPK pathway inhibition, oncogenic RASGRF fusions may represent a therapeutic target in rare molecular subsets of cancer.
Insights
RASGRF fusions are newly identified oncogenic drivers in cancers like lung and pancreatic cancer. These fusions activate the RAS pathway and may be targeted by MAPK inhibitors.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Targeted therapies are revolutionizing cancer treatment by focusing on specific oncogenic drivers.
- RASGRF1 and RASGRF2 are guanine exchange factors (GEFs) that activate RAS signaling, but their role in cancer is not fully understood.
Purpose of the Study:
- To investigate the prevalence, genetic diversity, and oncogenic mechanisms of RASGRF1 and RASGRF2 fusions in human malignancies.
- To explore the therapeutic potential of targeting RASGRF fusions.
Main Methods:
- Analysis of RNA-sequencing data from a large, real-world database of diverse human tumors.
- Functional assays to assess the transforming activity and oncogenic mechanisms of identified RASGRF fusions.
Main Results:
- Identified 40 tumors with RASGRF1/2 rearrangements, with half occurring in non-small cell lung carcinoma (NSCLC), pancreatic cancer, and melanoma.
- RASGRF fusions were enriched in tumors lacking other known driver alterations.
- Transmembrane partners and loss of N-terminal domains (PH1 and DH) in RASGRF fusions enhanced RAS activation and transforming activity.
- Loss of the PH1 domain alone was insufficient for cellular transformation.
Conclusions:
- RASGRF fusions represent a novel class of oncogenic drivers with diverse tissue distribution and structural variations.
- These fusions activate oncogenic signaling pathways, particularly through enhanced RAS activation.
- RASGRF fusions are potential therapeutic targets, as cancer models exhibit sensitivity to MAPK pathway inhibition.
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