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Deterministic Cell Pairing with Simultaneous Microfluidic Merging and Sorting of Droplets
Kevin M Joslin1, Sophia Dateshidze1, Seung Won Shin1
1Department of Bioengineering, University of California, Berkeley, California Institute for Quantitative Biosciences, Berkeley, California, USA.
Biorxiv : the Preprint Server for Biology
|July 9, 2025
Summary
Researchers developed a microfluidic device for precise cell pairing, enabling high-throughput studies of cell crosstalk. This merge-sort technology significantly improves the recovery of desired cell combinations for biological research.
Area of Science:
- Biotechnology
- Microfluidics
- Cell Biology
Background:
- Cell-cell interactions are crucial for biological processes like immune response and tissue repair.
- Studying cell crosstalk requires methods to create defined cell pairs, which are currently limited.
- High-throughput droplet microfluidics often suffers from random cell loading, yielding low percentages of desired combinations.
Purpose of the Study:
- To develop a microfluidic device for deterministic isolation of specific cell pairs.
- To enable high-throughput studies of cell crosstalk using precise cell co-culture.
- To overcome the limitations of random loading in droplet microfluidics.
Main Methods:
- A microfluidic device utilizing droplet merging and sorting ('merge-sorting') was developed.
- The system employs fluorescence detection to identify target cell combinations.
- Simultaneous electrocoalescence and dielectrophoretic sorting are triggered for isolation.
Main Results:
- Achieved 98.6% purity of merged and sorted fluorescent dye-loaded droplets.
- >90% recovery of desired cell pairs, a significant improvement over <1% with random loading.
- Produced monodisperse alginate hydrogels with 92% target cell pairs, maintaining viability for 18 hours.
Conclusions:
- The merge-sort platform enables flexible enrichment of specific droplet and cell combinations for high-throughput cell crosstalk studies.
- This method offers superior purity and recovery compared to existing techniques, facilitating cleaner downstream workflows.
- The device supports pre-incubation, multi-step assays, and isolation of desired pairs, offering versatile capabilities for biological research.

