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Updated: Sep 16, 2025

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In Vivo Proximity Biotinylation for Protein Interaction Studies in Paramecium tetraurelia
Published on: September 12, 2025
34
Tissue-Specific Biotinylation for Interorgan Communication.
Yifan Wang1, Ilia A Droujinine2
1Department of Molecular and Cellular Biology, Scripps Research, La Jolla, CA, USA.
Methods in Molecular Biology (Clifton, N.J.)
|July 10, 2025
Summary
This study introduces a novel mouse model to identify secreted proteins involved in organ communication. This method helps trace protein origins and destinations, advancing our understanding of health and disease.
Area of Science:
- Molecular Biology
- Physiology
- Biochemistry
Background:
- Interorgan communication is crucial for organismal adaptation and function.
- Disruptions in organ signaling networks are linked to various diseases.
- The secreted proteome's role in interorgan signaling is poorly understood due to identification challenges.
Purpose of the Study:
- To present a protocol for identifying and tracing secreted proteins using a novel mouse model.
- To enable the characterization of low-abundance secreted proteins and their origins/destinations.
- To provide new insights into secretory protein networks in development, homeostasis, and disease.
Main Methods:
- Utilized R26 BirA*G3-ER knock-in mice with an engineered biotin ligase.
- Labeled secreted proteins within the endoplasmic reticulum of specific organs.
- Developed methods for enrichment and identification of secreted proteins trafficked to distal organs.
Main Results:
- Successfully enabled the labeling of all secreted proteins within the ER of specific organs.
- Facilitated the identification of low-abundance secreted proteins.
- Allowed for the determination of secreted protein origins and destinations.
Conclusions:
- The R26 BirA*G3-ER mouse model provides a powerful tool for studying interorgan communication.
- This approach enhances the understanding of secretory protein networks.
- Offers new avenues for investigating mechanisms of development, homeostasis, and disease.
Keywords:
Affinity enrichmentBiotinylationBirA*G3-ERInterorgan communicationLiquid chromatography-tandem mass spectrometry (LC-MS/MS)Quantitative proteomicsSecretome
