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Published on: November 16, 2016
A post-COVID-19 upsurge in Group A Streptococcus in the Czech Republic was driven by emm1 and emm12 with shared
Marek Stefan1, Suhanya Prasad2, Ivana Vitkova3
1Department of Infectious Diseases and Travel Medicine, Second Faculty of Medicine, Charles University and Motol University Hospital, Prague, Czech Republic.
Background:
In 2023, a significant increase in Streptococcus pyogenes, Group A Streptococcus (GAS) culture positivity was observed in Czech microbiological laboratories. We conducted a multicentre study to obtain epidemiological data and characterise circulating strains.
Methods:
Eleven microbiology departments provided data on single-patient GAS-positive cultures from 2017 to 2023. Additionally, 10 consecutive, single-patient GAS isolates from 12 hospitals were submitted in May 2023 for whole-genome sequencing and antimicrobial susceptibility testing.
Results:
In 2023, there was a significant increase in GAS-positive cultures compared to the periods of 2017-2019 (p = 0.002), 2020-2021 (p < 0.00001), and 2022 (p = 0.001), with a disproportionate increase in children. Among 120 isolates, 12 different emm types and 16 multi-locus sequence types (STs) were identified, with emm1 (ST28, 35.0 %) and emm12 (STs 36, 101, 242, 1366, 32.5 %) being the most prevalent. Clonal clustering of emm1 and emm12 isolates across different study sites and geographic regions was demonstrated by whole-genome MLST analysis. When searching for shared virulence genes exclusive to emm1 and emm12 but absent in other emm types, immune evasion and colonisation factors (the streptococcal inhibitor of complement-sic gene in emm1, the distantly related sic-drs gene in emm12, and the sda1 gene in both) were identified.
Conclusions:
An upsurge in GAS infections, predominantly caused by emm1 and emm12, was identified in the Czech Republic. The combination of shared virulence factors, altered herd immunity and naïve immunity in children, resulting from contact precautions measures during the COVID-19 pandemic, may have contributed to their increased spread.
Insights
Group A Streptococcus (GAS) infections surged in the Czech Republic in 2023, primarily driven by emm1 and emm12 strains. Factors like shared virulence genes and reduced immunity in children likely contributed to this increase.
Area of Science:
- Microbiology
- Epidemiology
- Infectious Diseases
Background:
- A notable rise in Streptococcus pyogenes (Group A Streptococcus - GAS) culture positivity was observed in Czech laboratories during 2023.
- This prompted a multicentre study to investigate the epidemiology and characteristics of the circulating strains.
Purpose of the Study:
- To analyze epidemiological data on GAS infections in the Czech Republic from 2017 to 2023.
- To characterize the genetic and antimicrobial susceptibility profiles of prevalent GAS strains.
Main Methods:
- Data from 11 microbiology departments on GAS-positive cultures from 2017-2023 were collected.
- Whole-genome sequencing and antimicrobial susceptibility testing were performed on 120 GAS isolates from May 2023.
Main Results:
- A statistically significant increase in GAS-positive cultures was recorded in 2023 compared to previous years, particularly affecting children.
- The most common strains were emm1 (ST28) and emm12 (multiple STs), showing clonal clustering across regions.
- Key virulence factors, including immune evasion (sic, sic-drs) and colonization (sda1) genes, were identified in emm1 and emm12 strains.
Conclusions:
- The Czech Republic experienced an upsurge in GAS infections, predominantly caused by emm1 and emm12 strains.
- A combination of shared virulence factors, altered herd immunity, and decreased immunity in children post-COVID-19 pandemic measures may explain the increased transmission.
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