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Sequencing Small Non-coding RNA from Formalin-fixed Tissues and Serum-derived Exosomes from Castration-resistant Prostate Cancer Patients
Published on: November 19, 2019
NASP implication in the androgen receptor associated with castration resistance in prostate cancer
Yun Feng1, Jin Sun1,2, Xuan Kang3
1Research Center for Translational Medicine at East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China.
Abstract:
Uncovering the mechanisms underlying tumor malignancy is extremely important for cancer treatment and management. In this study, using a pairwise cell model, LNCaP and its castration-resistant derivative C42B, we analyze the function of enhanced NASP protein in castration resistance. The data show that the expression of androgen receptor-targeted genes was obviously affected by NASP knockdown in C42B cells, and nearly 20% of the differential genes were AR dependent. ATAC-seq analysis revealed that NASP knockdown in C42B cells comprehensively increased chromatin accessibility, and disorders at AR occupancy regions were more prominent. Castration-induced genes, especially androgen-independent AR target genes, were enriched in the downregulated gene group. Further analysis of high-order chromatin interactions revealed that NASP knockdown in C42B led to frequent changes in multiple layers, including the compartment A/B transition, TAD boundary distance and chromatin loop, and AR-binding regions especially underwent more extensive reconstruction. Finally, we found that the recovery of the histone H3 pool in C42B can actually recall H3 back to the previous regions with both H3 and AR loss induced by NASP knockdown, but AR rebinding to the corresponding sites is obviously inhibited and lagging. These data indicate that NASP plays a fundamental role in guarding proper and fine mechanisms of AR in prostate cancer promotion and malignancy.
Insights
Nuclear ASpartate Protease (NASP) protein is crucial for prostate cancer malignancy. NASP knockdown disrupts androgen receptor (AR) binding and chromatin accessibility, impacting gene expression and tumor progression.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Understanding tumor malignancy mechanisms is vital for cancer treatment.
- Prostate cancer progression involves castration resistance and androgen receptor (AR) signaling.
Purpose of the Study:
- To investigate the role of Nuclear ASpartate Protease (NASP) in castration-resistant prostate cancer.
- To elucidate how NASP influences AR function and chromatin dynamics in C42B cells.
Main Methods:
- Utilized a pairwise cell model (LNCaP and C42B) for comparative analysis.
- Performed NASP knockdown experiments in C42B cells.
- Employed ATAC-seq and high-order chromatin interaction analysis.
- Analyzed gene expression and AR occupancy.
Main Results:
- NASP knockdown significantly affected AR-targeted gene expression, with 20% being AR-dependent.
- NASP knockdown increased global chromatin accessibility and disrupted AR binding sites.
- High-order chromatin interactions, including TAD boundaries and loops, were altered by NASP knockdown.
- Histone H3 recovery did not restore AR binding efficiently after NASP knockdown.
Conclusions:
- NASP plays a fundamental role in regulating AR mechanisms in prostate cancer.
- NASP is essential for maintaining proper AR function and chromatin organization during cancer progression.
- Disruption of NASP impacts AR-dependent gene expression and chromatin accessibility, contributing to malignancy.
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