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Updated: May 5, 2026
Obtaining High-Quality Transcriptome Data from Cereal Seeds by a Modified Method for Gene Expression Profiling
Published on: May 21, 2020
Genome-wide identification, comparative analysis, and expression profiling of stress-associated protein (SAP) gene
Kishor Prabhakar Panzade1, Pawankumar S Kharate2, Rajendra Shende3
1Department of Plant Biotechnology, SDMVM College of Agricultural Biotechnology, Georai Tanda, Chh. Sambhaji Nagar (Aurangabad), Maharashtra 431002 India.
Abstract:
A genome-wide analysis identified 12 stress-associated protein (SAP) genes in Sorghum bicolor. Phylogenetic analysis classified these genes into three clades, each with conserved zinc finger domains (ZF-A20/AN1) crucial for stress responses. Gene duplication analysis revealed two segmental and three tandem duplications under purifying selection, indicating evolutionary pressure. Phylogenetic and synteny analyses showed conservation among monocots and divergence from dicots. Promoter analysis identified cis-regulatory elements linked to abiotic stress, hormone signaling, and growth regulation, while five SbSAP genes were targeted by stress-responsive miRNAs. Transcriptome and qRT-PCR analyses demonstrated tissue-specific, developmental, and stress-specific expressions, with most SbSAP genes significantly up-regulated under cold and salinity stress, but minimally expressed under heat and drought stress, suggesting distinct regulatory mechanisms. Conserved genes, including SbSAP9, SbSAP11, SbSAP6, SbSAP7, and SbSAP12, were identified as potential key candidates for further functional analysis for stress tolerance. These findings highlight the critical roles of SbSAP genes in abiotic stress adaptation, offering insights into developing stress-resilient S. bicolor and related crops.
Supplementary Information:
The online version contains supplementary material available at 10.1007/s13205-025-04424-0.
