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Updated: Sep 15, 2025

Exploring m6A and m5C Epitranscriptomes upon Viral Infection: an Example with HIV
Published on: March 5, 2022
m5C RNA Methylation Is Dysregulated by Oncogenic Herpesviruses via c-Myc Signaling to Counteract Host Antiviral
Zhenyu Wu1, Dawei Zhou1, Zhixian He2
1Department of Pathology, College of Medicine, The Ohio State University, Columbus, OH 43210, USA.
Abstract:
Herpesviruses are a group of double-stranded DNA viruses known to develop versatile viral strategies to escape host immune surveillance for promoting their replication and propagation. This is illustrated by Kaposi's sarcoma-associated herpesvirus (KSHV), an oncogenic gamma-herpesvirus that overcomes host immune suppression by multiple mechanisms. In this study, we reported that KSHV dysregulates 5-methylcytosine (m5C) modification and mRNA stability of host antiviral factors to benefit its lytic replication. KSHV lytic reactivation or de novo challenge led to downregulation of m5C RNA methyltransferases, NSUN2 and NSUN1 (NSUN2/1), while NSUN2/1 depletion promoted KSHV lytic replication. Such KSHV-mediated downregulation of NSUN2/1 is via suppression of the transcriptional factor c-Myc. We further performed the RNA bisulfite sequencing (RNA-BS-seq) to identify KSHV-dependent m5C modification of host mRNAs. KSHV lytic reactivation led to the significant reduction of m5C methylation and mRNA stability of TRIM25, a key activator of the RIG-I pathway, while TRIM25 depletion indeed promoted KSHV lytic replication. These host-virus interaction events were also observed in the infection of another oncogenic gamma-herpesvirus Epstein-Barr virus (EBV). Overall, our results highlighted a new strategy for human gamma-herpesviruses to counteract host antiviral factors and promote their lytic replication by manipulating host m5C RNA methylation.
Insights
Human gamma-herpesviruses like KSHV manipulate host RNA methylation to suppress antiviral defenses. This strategy aids viral replication by downregulating key factors such as TRIM25.
Area of Science:
- Virology
- Molecular Biology
- Epigenetics
Background:
- Herpesviruses employ immune evasion strategies for replication.
- Kaposi's sarcoma-associated herpesvirus (KSHV) is an oncogenic gamma-herpesvirus.
- Host immune suppression is overcome by KSHV through various mechanisms.
Purpose of the Study:
- To investigate how KSHV dysregulates host 5-methylcytosine (m5C) modification and mRNA stability.
- To identify viral strategies for overcoming host antiviral responses.
- To understand the role of m5C RNA methylation in gamma-herpesvirus replication.
Main Methods:
- RNA bisulfite sequencing (RNA-BS-seq) to identify m5C modifications.
- Analysis of m5C RNA methyltransferases NSUN2 and NSUN1.
- Investigating the impact of TRIM25 on KSHV replication.
Main Results:
- KSHV infection downregulates m5C RNA methyltransferases NSUN2/1 via c-Myc suppression.
- KSHV reduces m5C methylation and stability of TRIM25, a RIG-I pathway activator.
- Depletion of NSUN2/1 or TRIM25 enhances KSHV lytic replication.
- Similar mechanisms were observed with Epstein-Barr virus (EBV).
Conclusions:
- Human gamma-herpesviruses utilize host m5C RNA methylation to suppress antiviral factors.
- This manipulation promotes KSHV and EBV lytic replication.
- Targeting m5C RNA methylation represents a novel viral immune evasion strategy.
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