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Identification of Enzalutamide-Related Genes for Prognosis and Immunotherapy in Prostate Adenocarcinoma
Lian Fang1, Zongming Jia1, Tao Zou1
1Department of Urology, First Affiliated Hospital of Soochow University, Suzhou, Jiangsu, China.
Abstract:
Enzalutamide is classified as a novel antiandrogen medication; however, the majority of patients ultimately develop resistance to it. Consequently, conducting an in-depth investigation into potential targets of enzalutamide is essential for addressing the drug resistance observed in patients and for facilitating the discovery of new therapeutic targets. The SwissTargetPrediction database was used to identify targets linked to enzalutamide and to assess these targets in the prostate adenocarcinoma (PRAD) dataset sourced from the TCGA database. By employing various datasets and applying different machine learning methods for clustering, researchers constructed and validated both diagnostic and prognostic models for PRAD. A correlation analysis with the androgen receptor revealed TDP1 as the gene most significantly associated with enzalutamide. In addition, this study examined the relationship between TDP1 and immune infiltration. The expression levels of TDP1 and its prognostic correlation in PRAD patients were validated through immunofluorescence staining of 60 PRAD tissue specimens. Cluster analysis revealed a notable correlation among the 24 genes related to enzalutamide with regard to both prognosis and immune infiltration in PRAD patients. The diagnostic model, which incorporates various machine learning techniques, exhibits robust predictive ability for PRAD diagnosis, while the prognostic model employing the LASSO algorithm has also shown encouraging outcomes. Among the various prognostic genes linked to enzalutamide, TDP1 stands out as an important indicator of prognosis. Furthermore, immunofluorescence experiments confirmed that an increased expression of TDP1 is associated with a worse prognosis in patients with PRAD. Our results underscore the substantial potential of TDP1 as a novel diagnostic and prognostic biomarker for individuals diagnosed with PRAD.
Insights
Enzalutamide resistance in prostate cancer patients may be overcome by targeting TDP1. This study identifies TDP1 as a key prognostic biomarker, showing its increased expression correlates with worse outcomes in prostate adenocarcinoma.
Area of Science:
- Oncology
- Genetics
- Bioinformatics
Background:
- Enzalutamide is an antiandrogen medication for prostate cancer.
- Most patients develop resistance to enzalutamide, necessitating new therapeutic targets.
- Investigating enzalutamide targets is crucial for overcoming drug resistance.
Purpose of the Study:
- To identify and validate potential therapeutic targets for enzalutamide resistance in prostate adenocarcinoma.
- To assess the diagnostic and prognostic potential of identified targets.
- To explore the relationship between therapeutic targets and immune infiltration in prostate cancer.
Main Methods:
- Utilized SwissTargetPrediction database to identify enzalutamide targets.
- Analyzed The Cancer Genome Atlas (TCGA) prostate adenocarcinoma (PRAD) dataset.
- Employed machine learning for diagnostic and prognostic model construction and validation.
- Performed correlation analysis with androgen receptor and immune infiltration.
- Validated findings using immunofluorescence staining on PRAD tissue specimens.
Main Results:
- TDP1 was identified as the gene most significantly associated with enzalutamide via correlation analysis.
- TDP1 expression showed a significant correlation with prognosis and immune infiltration in PRAD patients.
- Machine learning models demonstrated robust predictive ability for PRAD diagnosis and prognosis.
- Immunofluorescence confirmed that increased TDP1 expression is linked to a worse prognosis in PRAD patients.
Conclusions:
- TDP1 is a significant prognostic biomarker in prostate adenocarcinoma.
- TDP1 holds potential as a novel diagnostic and prognostic biomarker for PRAD.
- Targeting TDP1 may offer a strategy to overcome enzalutamide resistance in prostate cancer.
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