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Identification and modulation of a PI3K/AKT/mTOR pathway-targeting microRNA in order to increase colorectal cancer
Seyedeh Nasibeh Mousavikia1,2, Maryam M Matin3,4, Mohammad Taghi Bahreyni Tossi2
1Department of Medical Physics, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran.
Background:
The progression of colorectal cancer (CRC) occurs via the PI3K/AKT/mTOR signaling pathway. Recent evidence suggests that microRNAs (miRNAs) can modulate gene expression, potentially offering new treatment options. This study aims to identify a miRNA that enhances radiosensitivity in CRC by targeting the PI3K/AKT/mTOR signaling pathway.
Methods:
Gene expression datasets of CRC patients were retrieved from the NCBI database. Genes from the PI3K/AKT/mTOR signaling pathway were identified using the KEGG database. miRNA-mRNA binding sites were determined using TarBase, miRTarBase, mirDIP and miRNet. The selected miRNA was transfected into CRC cell lines, focusing on the two most responsive lines. Radiosensitivity was assessed by clonogenic assays and analysis of apoptotic cells in both irradiated and non-irradiated groups. Changes in gene expression were analyzed by real-time PCR.
Results:
Data from 87 CRC patients were extracted and revealed 20 genes associated with the pathway according to specific criteria (logFC > 0 and adj.P < 0.05).miR-16-5p was selected for further investigation. The optimal transfection time was set at 48 h, with LoVo and HT-29 selected as cell lines. Irradiation with 4 Gy significantly suppressed miR-16-5p in both lines (P < 0.0023 for LoVo; P < 0.0001 for HT-29). miR-16-5p effectively suppressed the target genes CCNE1, CCND1, MYC, CDK4, HSP90AB1 and PIK3CA, with remarkable changes in gene expression after irradiation. Transfection and irradiation decreased cell survival (P < 0.05) and increased apoptosis (P < 0.0001).
Conclusion:
The PI3K/AKT/mTOR signalling pathway is associated with radioresistance in CRC. miR-16-5p represses pathway genes and increases radiosensitivity, suggesting that miRNA-based gene therapy may improve treatment outcomes and patient quality of life.
Insights
MicroRNA-16-5p enhances colorectal cancer (CRC) radiosensitivity by targeting the PI3K/AKT/mTOR pathway. This miRNA-based therapy offers a potential strategy to improve CRC treatment outcomes.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Colorectal cancer (CRC) progression is linked to the PI3K/AKT/mTOR signaling pathway.
- MicroRNAs (miRNAs) are emerging as critical regulators of gene expression with therapeutic potential.
- Identifying specific miRNAs can offer novel strategies to overcome radioresistance in CRC.
Purpose of the Study:
- To identify a miRNA that enhances radiosensitivity in colorectal cancer.
- To investigate the role of this miRNA in targeting the PI3K/AKT/mTOR signaling pathway.
- To evaluate the therapeutic potential of miRNA-based interventions for CRC.
Main Methods:
- Analysis of gene expression datasets from 87 CRC patients.
- Identification of PI3K/AKT/mTOR pathway genes using KEGG database.
- Determination of miRNA-mRNA binding sites using multiple databases (TarBase, miRTarBase, mirDIP, miRNet).
- Transfection of selected miRNA (miR-16-5p) into CRC cell lines (LoVo, HT-29).
- Assessment of radiosensitivity via clonogenic assays and apoptosis analysis.
- Gene expression analysis using real-time PCR.
Main Results:
- miR-16-5p was identified as a key miRNA involved in CRC radiosensitivity.
- Irradiation significantly suppressed miR-16-5p expression in CRC cell lines.
- miR-16-5p effectively suppressed target genes (CCNE1, CCND1, MYC, CDK4, HSP90AB1, PIK3CA) within the PI3K/AKT/mTOR pathway.
- Combined transfection and irradiation decreased cell survival and increased apoptosis.
Conclusions:
- The PI3K/AKT/mTOR pathway is implicated in colorectal cancer radioresistance.
- miR-16-5p acts as a radiosensitizer by repressing key pathway genes.
- miRNA-based gene therapy presents a promising approach to enhance CRC treatment efficacy and patient outcomes.
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