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Synthetic Rewiring of Virus-Like Particles via Circular Permutation Enables Modular Peptide Display and Protein
Shiqi Liang1, Kaavya Butaney2, Daniel de Castro Assumpção2
1Interdisciplinary Biological Sciences Program, Northwestern University, Evanston, Illinois, USA.
Biorxiv : the Preprint Server for Biology
|July 15, 2025
Summary
This study explores circular permutation for engineering self-assembling protein nanoparticles, using the MS2 virus-like particle (VLP) as a model. This novel approach enables new features like peptide tagging and protein encapsulation, expanding VLP engineering capabilities.
Area of Science:
- Biotechnology
- Structural Biology
- Nanotechnology
Background:
- Virus-like particles (VLPs) are versatile protein-based nanoparticles with applications in drug delivery and vaccine development.
- Engineering VLPs for novel functions often involves modifying protein subunits, but natural evolutionary strategies like circular permutation remain underexplored.
Purpose of the Study:
- To investigate the utility of circular permutation for engineering self-assembling protein nanoparticles.
- To create and characterize a comprehensive circular permutation library of the MS2 coat protein.
- To demonstrate novel functionalities enabled by circular permutation in VLPs.
Main Methods:
- Construction of a circular permutation library for the MS2 coat protein dimer.
- Validation of new terminal locations using cryo-electron microscopy.
- Development of C-terminal peptide tagging and covalent protein encapsulation strategies.
Main Results:
- Identification of novel terminal locations in the MS2 coat protein through circular permutation.
- Successful C-terminal peptide tagging and stable protein encapsulation via covalent bonding.
- Demonstration that circular permutation expands VLP engineering potential beyond traditional methods.
Conclusions:
- Circular permutation is a powerful strategy for engineering self-assembling protein nanoparticles.
- This technique allows for the creation of VLPs with novel functionalities not possible with native proteins.
- The study provides a systematic framework for exploring VLP structural determinants and engineering new features.

