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Dual-stage segmentation and classification framework for skin lesion analysis using deep neural network.
Khadija Manzoor1, Nauman U Gilal2, Marco Agus1
1College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar.
Digital Health
|July 16, 2025
Summary
This study introduces a dual-stage deep learning framework for accurate skin lesion segmentation and classification. The model shows high performance on diverse datasets, aiding in early skin disease detection and teledermatology.
Area of Science:
- Dermatology and Medical Imaging
- Artificial Intelligence in Healthcare
- Computational Pathology
Background:
- Skin diseases pose a global health burden, impacting physical and psychosocial well-being.
- Early and accurate detection of skin lesions, particularly malignant ones, is crucial for effective treatment and patient outcomes.
- Challenges in skin lesion analysis include data imbalance, variability in lesion appearance, and low image contrast.
Purpose of the Study:
- To develop and evaluate a dual-stage deep learning framework for precise skin lesion segmentation and classification.
- To address the challenges of imbalanced datasets and lesion variability in automated skin disease detection.
- To assess the framework's performance on benchmark datasets and a novel, clinically realistic dataset.
Main Methods:
- A U-Net model with a VGG16 encoder was employed for precise instance segmentation of skin lesions.
- EfficientFormer and SwiftFormer networks were utilized for lesion classification, tested on balanced and imbalanced data.
- Experiments were conducted on HAM10000, ISIC 2018, and the ISIC 2024 SLICE-3D datasets, including fusion approaches for the latter.
Main Results:
- The EfficientFormerV2 model achieved 97.11% accuracy and a 97.14% F1-score on the balanced HAM10000 dataset.
- The segmentation model demonstrated high performance on ISIC 2018, with 97.59% accuracy and 94.24% Dice similarity.
- On the ISIC 2024 SLICE-3D dataset, image+tabular fusion achieved a competitive score, highlighting performance in imbalanced, realistic settings.
Conclusions:
- The dual-stage deep learning framework exhibits high accuracy and robustness for skin lesion segmentation and classification.
- The framework's adaptability to large-scale, non-dermoscopic data like SLICE-3D indicates its potential for real-world applications.
- This approach shows promise for improving skin cancer triage and teledermatology services.
Keywords:
Skin lesion segmentationdeep learningimage augmentationskin cancerskin disease classification
