Energy Diagrams, Transition States, and Intermediates
Predicting Reaction Outcomes
Multi-Step Reactions
Chemical Reactions
Introduction to Chemical Reactions
Chemical Synapses
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Updated: Sep 15, 2025

A Web Tool for Generating High Quality Machine-readable Biological Pathways
Published on: February 8, 2017
Kalyan Ramakrishnan1, Lars L Schaaf2,3, Chen Lin1
1University of Oxford, Oxford, United Kingdom.
Neural networks can now continuously represent minimum energy paths, offering a flexible alternative to discrete methods like Nudged Elastic Band (NEB). This approach enables faster transition state estimation and handles complex reaction mechanisms effectively.
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