Related Experiment Video
Updated: Sep 15, 2025

Biosensor-based High Throughput Biopanning and Bioinformatics Analysis Strategy for the Global Validation of Drug-protein Interactions
Published on: December 1, 2020
Drug Interaction PBPK Modeling: Review of the Literature Exposes the Need for Increased Verification of Model Inputs
David Rodrigues1, Christopher R Gibson1, Nina Isoherranen2
1Drug Metabolism & Nonclinical Pharmacokinetics, Translational Medicine, Incyte, Wilmington, Delaware, USA.
Abstract:
In vitro data are routinely used to support both static and physiologically based pharmacokinetic (PBPK) model-based drug-drug interaction (DDI) predictions. Such efforts are possible after years of rapid progress, enabled by the greater availability of in vitro reagents, kinetic models, and ready access to PBPK software packages with increased computing power supported by drug-specific compound files. While acknowledging the progress, however, various investigators have documented the challenges and pitfalls associated with PBPK modeling and have called for improved model verification, credibility assessment, and greater confidence building. As summarized in the current narrative, a review of the DDI literature does expose the need for PBPK model parameter (input and output) verification. Representative examples of PBPK-based modeling involving induction (cytochrome P450 (CYP) 3A4 and organic anion transporting polypeptide 1B1 and 1B3), pregnancy-associated upregulation (CYP2D6), and inhibition (CYP1A2-mediated metabolism and creatinine renal clearance) are described. The narrative also includes the clinical application of biomarkers (e.g., CYP3A4 and CYP2D6) and tissue biopsy expression profiling as a means of providing additional mechanistic information and DDI data that are independent and complementary to PBPK models. With the advent of in vitro microphysiological systems, biomarkers, burgeoning plasma-based (liquid) biopsy protocols, and the possibility of machine learning-enabled literature searches integrated with modeling software, it is envisioned that such tools could be used jointly to further enhance PBPK model verification efforts within a predefined credibility assessment framework. Ultimately, the goal is to deploy PBPK modeling with greater confidence in lieu of time and resource-intensive clinical DDI studies.
Related Concept Videos
Pharmacokinetic Models: Comparison and Selection Criterion
Physiological models take a detailed approach by considering specific molecular processes. They can predict drug distribution, metabolism, and elimination changes, providing a comprehensive understanding of how drugs interact with the body.
Physiological Pharmacokinetic Models: Incorporating Hepatic Transporter-Mediated Clearance
A recent model describes pravastatin's hepatobiliary excretion,...
Pharmacokinetic Models: Overview
There are three primary types of models: empirical, compartment, and physiological. Empirical models, with minimal...
Analysis of Population Pharmacokinetic Data
Mechanistic Models: Overview of Compartment Models
Analysis Methods of Pharmacokinetic Data: Model and Model-Independent Approaches
The model approach uses mathematical models to describe changes in drug concentration over time. Pharmacokinetic models help characterize drug behavior in patients, predict drug concentration in the body fluids, calculate optimum dosage regimens, and evaluate the risk of toxicity. However, ensuring that the model fits the experimental data accurately...

