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Targeting NEDD9-SH3 with a Covalent Peptide Controls Endothelial Phenotype
Andriy O Samokhin1,2, Hyuk-Soo Seo3, Alison Leed4
1Department of Medicine, Division of Cardiovascular Medicine, University of Maryland School of Medicine, Baltimore, MD.
Biorxiv : the Preprint Server for Biology
|July 17, 2025
Summary
Researchers developed a novel peptidomimetic drug to target the NEDD9 protein, a key regulator in pulmonary arterial hypertension (PAH). This innovative approach successfully inhibited cell migration and reversed vascular remodeling, offering a promising new therapy for PAH.
Area of Science:
- Biochemistry
- Molecular Biology
- Pharmacology
Background:
- Src homology 3 (SH3) proteins are implicated in fibroproliferative diseases like pulmonary arterial hypertension (PAH).
- Targeting SH3 proteins therapeutically presents significant challenges.
- Neural precursor cell expressed, developmentally down-regulated 9 (NEDD9) is a pro-PAH regulator containing an SH3 domain.
Purpose of the Study:
- To develop a novel peptidomimetic targeting the SH3 domain of NEDD9.
- To investigate the therapeutic potential of NEDD9 inhibition in pulmonary arterial hypertension (PAH).
- To elucidate the mechanisms by which NEDD9 influences endothelial cell phenotype and vascular remodeling.
Main Methods:
- Design and synthesis of a bromoacetamide-derivatized peptidomimetic targeting NEDD9's FAK binding site.
- Assessment of peptidomimetic effects on human pulmonary artery endothelial cell (HPAEC) migration and FAK binding.
- Investigation of NEDD9 and sulfatase-1 (SULF1) interactions using siRNA and overexpression studies.
- Evaluation of therapeutic efficacy in a rodent model of PAH.
Main Results:
- The peptidomimetic covalently bound to NEDD9 (Cys18), inhibiting FAK binding and HPAEC migration.
- NEDD9 inhibition, via siRNA or peptidomimetic, downregulated SULF1, promoting podosome formation and migration.
- Sulfatase-1 knockdown prevented PAH-related vascular remodeling and reversed pulmonary hypertension in vivo.
- The developed therapeutic approach demonstrated efficacy in reversing established PAH.
Conclusions:
- A structure-validated covalent peptidomimetic targeting the NEDD9 SH3 domain was successfully developed.
- NEDD9 regulates endothelial cell phenotype and vascular remodeling through convergent mechanisms involving sulfatase-1.
- This study establishes a novel SH3-specific therapeutic strategy for PAH and other fibroproliferative disorders.

