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Updated: Sep 8, 2025

X-Ray Crystallography to Study the Oligomeric State Transition of the Thermotoga maritima M42 Aminopeptidase TmPep1050
Published on: May 13, 2020
Taming Tautomerism in Organic Crystal Structure Prediction
Cody J Perry1, Sebastian A Ramos1, Maria C Phelps1
1Department of Chemistry, University of California Riverside, Riverside, California 92521, United States.
Density functional theory (DFT) models poorly predict tautomeric crystal polymorph energetics, impacting drug formulation development. A new hybrid DFT method combined with coupled-cluster theory corrections improves accuracy, revealing errors in existing mebendazole crystal structure analysis.
Area of Science:
- Computational chemistry
- Solid-state chemistry
- Pharmaceutical sciences
Background:
- Tautomerism significantly affects drug properties like solubility, stability, efficacy, and toxicity.
- Computational solid-form screening aids in identifying optimal drug formulations and mitigating risks from undesirable crystal forms.
- Accurate prediction of tautomeric crystal polymorph energetics is crucial for reliable drug development.
Purpose of the Study:
- To evaluate the accuracy of widely used density functionals in predicting tautomeric crystal polymorph energetics.
- To investigate the impact of density-driven delocalization error on DFT predictions.
- To develop an improved computational method for accurate prediction of tautomeric polymorphs.
Main Methods:
- Application of various density functionals (DFT) to model tautomeric crystal polymorphs.
- Analysis of density-driven delocalization error in DFT calculations.
- Development and application of a hybrid DFT approach combined with intramolecular coupled-cluster (CC) theory corrections.
- Solid-state Nuclear Magnetic Resonance (NMR) spectroscopy for experimental validation.
Main Results:
- Standard DFT models exhibit significant errors in predicting tautomeric polymorph energetics, underestimating solid-state tautomerization barriers.
- Tautomeric polymorph energy differences can exceed 10 kJ/mol in ~40% of cases, with DFT errors reaching tens of kJ/mol.
- The refined hybrid DFT-CC method shows substantially improved agreement with experimental data.
- The study identified an incorrect tautomer in the experimentally reported crystal structure of mebendazole form B, confirmed by solid-state NMR.
Conclusions:
- Widely used DFT functionals are unreliable for predicting tautomeric crystal polymorph energetics due to delocalization errors.
- Accurate prediction of tautomeric polymorphs requires advanced computational methods, such as hybrid DFT with CC corrections.
- The findings necessitate re-evaluation of computational predictions for drug formulations involving tautomerism and highlight potential errors in existing crystal structure assignments.
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